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Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry

[Image: see text] The open-access scientific literature contains a wealth of information for meaningful text mining. However, this information is not always easy to retrieve. This technical note addresses the problem by a new flexible method combining in a single workflow existing resources for lite...

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Autor principal: Palmblad, Magnus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2019
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6448173/
https://www.ncbi.nlm.nih.gov/pubmed/30835438
http://dx.doi.org/10.1021/acs.analchem.8b05818
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author Palmblad, Magnus
author_facet Palmblad, Magnus
author_sort Palmblad, Magnus
collection PubMed
description [Image: see text] The open-access scientific literature contains a wealth of information for meaningful text mining. However, this information is not always easy to retrieve. This technical note addresses the problem by a new flexible method combining in a single workflow existing resources for literature searches, text mining, and large-scale prediction of physicochemical and biological properties. The results are visualized as virtual mass spectra, chromatograms, or images in styles new to text mining but familiar to analytical chemistry. The method is demonstrated on comparisons of analytical-chemistry techniques and semantically enriched searches for proteins and their activities, but it may also be of general utility in experimental design, drug discovery, chemical syntheses, business intelligence, and historical studies. The method is realized in shareable scientific workflows using only freely available data, services, and software that scale to millions of publications and named chemical entities in the literature.
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spelling pubmed-64481732019-04-05 Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry Palmblad, Magnus Anal Chem [Image: see text] The open-access scientific literature contains a wealth of information for meaningful text mining. However, this information is not always easy to retrieve. This technical note addresses the problem by a new flexible method combining in a single workflow existing resources for literature searches, text mining, and large-scale prediction of physicochemical and biological properties. The results are visualized as virtual mass spectra, chromatograms, or images in styles new to text mining but familiar to analytical chemistry. The method is demonstrated on comparisons of analytical-chemistry techniques and semantically enriched searches for proteins and their activities, but it may also be of general utility in experimental design, drug discovery, chemical syntheses, business intelligence, and historical studies. The method is realized in shareable scientific workflows using only freely available data, services, and software that scale to millions of publications and named chemical entities in the literature. American Chemical Society 2019-03-05 2019-04-02 /pmc/articles/PMC6448173/ /pubmed/30835438 http://dx.doi.org/10.1021/acs.analchem.8b05818 Text en Copyright © 2019 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes.
spellingShingle Palmblad, Magnus
Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry
title Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry
title_full Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry
title_fullStr Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry
title_full_unstemmed Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry
title_short Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry
title_sort visual and semantic enrichment of analytical chemistry literature searches by combining text mining and computational chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6448173/
https://www.ncbi.nlm.nih.gov/pubmed/30835438
http://dx.doi.org/10.1021/acs.analchem.8b05818
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