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Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry
[Image: see text] The open-access scientific literature contains a wealth of information for meaningful text mining. However, this information is not always easy to retrieve. This technical note addresses the problem by a new flexible method combining in a single workflow existing resources for lite...
Autor principal: | |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical
Society
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6448173/ https://www.ncbi.nlm.nih.gov/pubmed/30835438 http://dx.doi.org/10.1021/acs.analchem.8b05818 |
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author | Palmblad, Magnus |
author_facet | Palmblad, Magnus |
author_sort | Palmblad, Magnus |
collection | PubMed |
description | [Image: see text] The open-access scientific literature contains a wealth of information for meaningful text mining. However, this information is not always easy to retrieve. This technical note addresses the problem by a new flexible method combining in a single workflow existing resources for literature searches, text mining, and large-scale prediction of physicochemical and biological properties. The results are visualized as virtual mass spectra, chromatograms, or images in styles new to text mining but familiar to analytical chemistry. The method is demonstrated on comparisons of analytical-chemistry techniques and semantically enriched searches for proteins and their activities, but it may also be of general utility in experimental design, drug discovery, chemical syntheses, business intelligence, and historical studies. The method is realized in shareable scientific workflows using only freely available data, services, and software that scale to millions of publications and named chemical entities in the literature. |
format | Online Article Text |
id | pubmed-6448173 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American
Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-64481732019-04-05 Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry Palmblad, Magnus Anal Chem [Image: see text] The open-access scientific literature contains a wealth of information for meaningful text mining. However, this information is not always easy to retrieve. This technical note addresses the problem by a new flexible method combining in a single workflow existing resources for literature searches, text mining, and large-scale prediction of physicochemical and biological properties. The results are visualized as virtual mass spectra, chromatograms, or images in styles new to text mining but familiar to analytical chemistry. The method is demonstrated on comparisons of analytical-chemistry techniques and semantically enriched searches for proteins and their activities, but it may also be of general utility in experimental design, drug discovery, chemical syntheses, business intelligence, and historical studies. The method is realized in shareable scientific workflows using only freely available data, services, and software that scale to millions of publications and named chemical entities in the literature. American Chemical Society 2019-03-05 2019-04-02 /pmc/articles/PMC6448173/ /pubmed/30835438 http://dx.doi.org/10.1021/acs.analchem.8b05818 Text en Copyright © 2019 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Palmblad, Magnus Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry |
title | Visual and Semantic Enrichment of Analytical Chemistry
Literature Searches by Combining Text Mining and Computational Chemistry |
title_full | Visual and Semantic Enrichment of Analytical Chemistry
Literature Searches by Combining Text Mining and Computational Chemistry |
title_fullStr | Visual and Semantic Enrichment of Analytical Chemistry
Literature Searches by Combining Text Mining and Computational Chemistry |
title_full_unstemmed | Visual and Semantic Enrichment of Analytical Chemistry
Literature Searches by Combining Text Mining and Computational Chemistry |
title_short | Visual and Semantic Enrichment of Analytical Chemistry
Literature Searches by Combining Text Mining and Computational Chemistry |
title_sort | visual and semantic enrichment of analytical chemistry
literature searches by combining text mining and computational chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6448173/ https://www.ncbi.nlm.nih.gov/pubmed/30835438 http://dx.doi.org/10.1021/acs.analchem.8b05818 |
work_keys_str_mv | AT palmbladmagnus visualandsemanticenrichmentofanalyticalchemistryliteraturesearchesbycombiningtextminingandcomputationalchemistry |