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DORI Reveals the Influence of Noncovalent Interactions on Covalent Bonding Patterns in Molecular Crystals Under Pressure
[Image: see text] The study of organic molecular crystals under high pressure provides fundamental insight into crystal packing distortions and reveals mechanisms of phase transitions and the crystallization of polymorphs. These solid-state transformations can be monitored directly by analyzing elec...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6452419/ https://www.ncbi.nlm.nih.gov/pubmed/30865472 http://dx.doi.org/10.1021/acs.jpclett.9b00220 |
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author | Meyer, Benjamin Barthel, Senja Mace, Amber Vannay, Laurent Guillot, Benoit Smit, Berend Corminboeuf, Clémence |
author_facet | Meyer, Benjamin Barthel, Senja Mace, Amber Vannay, Laurent Guillot, Benoit Smit, Berend Corminboeuf, Clémence |
author_sort | Meyer, Benjamin |
collection | PubMed |
description | [Image: see text] The study of organic molecular crystals under high pressure provides fundamental insight into crystal packing distortions and reveals mechanisms of phase transitions and the crystallization of polymorphs. These solid-state transformations can be monitored directly by analyzing electron charge densities that are experimentally obtained at high pressure. However, restricting the analysis to the featureless electron density does not reveal the chemical bonding nature and the existence of intermolecular interactions. This shortcoming can be resolved by the use of the DORI (density overlap region indicator) descriptor, which is capable of simultaneously detecting both covalent patterns and noncovalent interactions from electron density and its derivatives. Using the biscarbonyl[14]annulene crystal under pressure as an example, we demonstrate how DORI can be exploited on experimental electron densities to reveal and monitor changes in electronic structure patterns resulting from molecular compression. A novel approach based on a flood-fill-type algorithm is proposed for analyzing the topology of the DORI isosurface. This approach avoids the arbitrary selection of DORI isovalues and provides an intuitive way to assess how compression packing affects covalent bonding in organic solids. |
format | Online Article Text |
id | pubmed-6452419 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-64524192019-04-09 DORI Reveals the Influence of Noncovalent Interactions on Covalent Bonding Patterns in Molecular Crystals Under Pressure Meyer, Benjamin Barthel, Senja Mace, Amber Vannay, Laurent Guillot, Benoit Smit, Berend Corminboeuf, Clémence J Phys Chem Lett [Image: see text] The study of organic molecular crystals under high pressure provides fundamental insight into crystal packing distortions and reveals mechanisms of phase transitions and the crystallization of polymorphs. These solid-state transformations can be monitored directly by analyzing electron charge densities that are experimentally obtained at high pressure. However, restricting the analysis to the featureless electron density does not reveal the chemical bonding nature and the existence of intermolecular interactions. This shortcoming can be resolved by the use of the DORI (density overlap region indicator) descriptor, which is capable of simultaneously detecting both covalent patterns and noncovalent interactions from electron density and its derivatives. Using the biscarbonyl[14]annulene crystal under pressure as an example, we demonstrate how DORI can be exploited on experimental electron densities to reveal and monitor changes in electronic structure patterns resulting from molecular compression. A novel approach based on a flood-fill-type algorithm is proposed for analyzing the topology of the DORI isosurface. This approach avoids the arbitrary selection of DORI isovalues and provides an intuitive way to assess how compression packing affects covalent bonding in organic solids. American Chemical Society 2019-03-13 2019-04-04 /pmc/articles/PMC6452419/ /pubmed/30865472 http://dx.doi.org/10.1021/acs.jpclett.9b00220 Text en Copyright © 2019 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Meyer, Benjamin Barthel, Senja Mace, Amber Vannay, Laurent Guillot, Benoit Smit, Berend Corminboeuf, Clémence DORI Reveals the Influence of Noncovalent Interactions on Covalent Bonding Patterns in Molecular Crystals Under Pressure |
title | DORI Reveals the Influence of Noncovalent Interactions
on Covalent Bonding Patterns in Molecular Crystals Under Pressure |
title_full | DORI Reveals the Influence of Noncovalent Interactions
on Covalent Bonding Patterns in Molecular Crystals Under Pressure |
title_fullStr | DORI Reveals the Influence of Noncovalent Interactions
on Covalent Bonding Patterns in Molecular Crystals Under Pressure |
title_full_unstemmed | DORI Reveals the Influence of Noncovalent Interactions
on Covalent Bonding Patterns in Molecular Crystals Under Pressure |
title_short | DORI Reveals the Influence of Noncovalent Interactions
on Covalent Bonding Patterns in Molecular Crystals Under Pressure |
title_sort | dori reveals the influence of noncovalent interactions
on covalent bonding patterns in molecular crystals under pressure |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6452419/ https://www.ncbi.nlm.nih.gov/pubmed/30865472 http://dx.doi.org/10.1021/acs.jpclett.9b00220 |
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