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Reclassification calibration test for censored survival data: performance and comparison to goodness-of-fit criteria

BACKGROUND: The risk reclassification table assesses clinical performance of a biomarker in terms of movements across relevant risk categories. The Reclassification- Calibration (RC) statistic has been developed for binary outcomes, but its performance for survival data with moderate to high censori...

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Autores principales: Demler, Olga V., Paynter, Nina P., Cook, Nancy R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456068/
https://www.ncbi.nlm.nih.gov/pubmed/30984876
http://dx.doi.org/10.1186/s41512-018-0034-5
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author Demler, Olga V.
Paynter, Nina P.
Cook, Nancy R.
author_facet Demler, Olga V.
Paynter, Nina P.
Cook, Nancy R.
author_sort Demler, Olga V.
collection PubMed
description BACKGROUND: The risk reclassification table assesses clinical performance of a biomarker in terms of movements across relevant risk categories. The Reclassification- Calibration (RC) statistic has been developed for binary outcomes, but its performance for survival data with moderate to high censoring rates has not been evaluated. METHODS: We develop an RC statistic for survival data with higher censoring rates using the Greenwood-Nam-D’Agostino approach (RC-GND). We examine its performance characteristics and compare its performance and utility to the Hosmer-Lemeshow goodness-of-fit test under various assumptions about the censoring rate and the shape of the baseline hazard. RESULTS: The RC-GND test was robust to high (up to 50%) censoring rates and did not exceed the targeted 5% Type I error in a variety of simulated scenarios. It achieved 80% power to detect better calibration with respect to clinical categories when an important predictor with a hazard ratio of at least 1.7 to 2.2 was added to the model, while the Hosmer-Lemeshow goodness-of-fit (gof) test had power of 5% in this scenario. CONCLUSIONS: The RC-GND test should be used to test the improvement in calibration with respect to clinically relevant risk strata. When an important predictor is omitted, the Hosmer-Lemeshow goodness-of-fit test is usually not significant, while the RC-GND test is sensitive to such an omission. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s41512-018-0034-5) contains supplementary material, which is available to authorized users.
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spelling pubmed-64560682019-05-15 Reclassification calibration test for censored survival data: performance and comparison to goodness-of-fit criteria Demler, Olga V. Paynter, Nina P. Cook, Nancy R. Diagn Progn Res Methodology BACKGROUND: The risk reclassification table assesses clinical performance of a biomarker in terms of movements across relevant risk categories. The Reclassification- Calibration (RC) statistic has been developed for binary outcomes, but its performance for survival data with moderate to high censoring rates has not been evaluated. METHODS: We develop an RC statistic for survival data with higher censoring rates using the Greenwood-Nam-D’Agostino approach (RC-GND). We examine its performance characteristics and compare its performance and utility to the Hosmer-Lemeshow goodness-of-fit test under various assumptions about the censoring rate and the shape of the baseline hazard. RESULTS: The RC-GND test was robust to high (up to 50%) censoring rates and did not exceed the targeted 5% Type I error in a variety of simulated scenarios. It achieved 80% power to detect better calibration with respect to clinical categories when an important predictor with a hazard ratio of at least 1.7 to 2.2 was added to the model, while the Hosmer-Lemeshow goodness-of-fit (gof) test had power of 5% in this scenario. CONCLUSIONS: The RC-GND test should be used to test the improvement in calibration with respect to clinically relevant risk strata. When an important predictor is omitted, the Hosmer-Lemeshow goodness-of-fit test is usually not significant, while the RC-GND test is sensitive to such an omission. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s41512-018-0034-5) contains supplementary material, which is available to authorized users. BioMed Central 2018-07-26 /pmc/articles/PMC6456068/ /pubmed/30984876 http://dx.doi.org/10.1186/s41512-018-0034-5 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology
Demler, Olga V.
Paynter, Nina P.
Cook, Nancy R.
Reclassification calibration test for censored survival data: performance and comparison to goodness-of-fit criteria
title Reclassification calibration test for censored survival data: performance and comparison to goodness-of-fit criteria
title_full Reclassification calibration test for censored survival data: performance and comparison to goodness-of-fit criteria
title_fullStr Reclassification calibration test for censored survival data: performance and comparison to goodness-of-fit criteria
title_full_unstemmed Reclassification calibration test for censored survival data: performance and comparison to goodness-of-fit criteria
title_short Reclassification calibration test for censored survival data: performance and comparison to goodness-of-fit criteria
title_sort reclassification calibration test for censored survival data: performance and comparison to goodness-of-fit criteria
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456068/
https://www.ncbi.nlm.nih.gov/pubmed/30984876
http://dx.doi.org/10.1186/s41512-018-0034-5
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