Cargando…

Understanding Human-Virus Protein-Protein Interactions Using a Human Protein Complex-Based Analysis Framework

Computational analysis of human-virus protein-protein interaction (PPI) data is an effective way toward systems understanding the molecular mechanism of viral infection. Previous work has mainly focused on characterizing the global properties of viral targets within the entire human PPI network. In...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yang, Shiping, Fu, Chen, Lian, Xianyi, Dong, Xiaobao, Zhang, Ziding
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2019
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456672/ https://www.ncbi.nlm.nih.gov/pubmed/30984872 http://dx.doi.org/10.1128/mSystems.00303-18

Ejemplares similares

Deep Learning-Powered Prediction of Human-Virus Protein-Protein Interactions
por: Yang, Xiaodi, et al.
Publicado: (2022)

Human Gene Functional Network-Informed Prediction of HIV-1 Host Dependency Factors
por: Fu, Chen, et al.
Publicado: (2020)

Prediction of human-virus protein-protein interactions through a sequence embedding-based machine learning method
por: Yang, Xiaodi, et al.
Publicado: (2019)

PlaPPISite: a comprehensive resource for plant protein-protein interaction sites
por: Yang, Xiaodi, et al.
Publicado: (2020)

Emvirus: An embedding-based neural framework for human-virus protein-protein interactions prediction
por: Xie, Pengfei, et al.
Publicado: (2023)

A multitask transfer learning framework for the prediction of virus-human protein–protein interactions
por: Dong, Thi Ngan, et al.
Publicado: (2021)

Protein-protein interactions of human viruses
por: Goodacre, Norman, et al.
Publicado: (2020)

MAPanalyzer: a novel online tool for analyzing microtubule-associated proteins
por: Zhou, Yuan, et al.
Publicado: (2015)

Toward an understanding of the protein interaction network of the human liver
por: Wang, Jian, et al.
Publicado: (2011)

Toward an understanding of the protein interaction network of the human liver
por: Wang, Jian, et al.
Publicado: (2017)

Improving the Understanding of Pathogenesis of Human Papillomavirus 16 via Mapping Protein-Protein Interaction Network
por: Dong, Yongcheng, et al.
Publicado: (2015)

Proteome-wide prediction and analysis of the Cryptosporidium parvum protein–protein interaction network through integrative methods
por: Ren, Panyu, et al.
Publicado: (2022)

Prediction of Protein-Protein Interactions Related to Protein Complexes Based on Protein Interaction Networks
por: Liu, Peng, et al.
Publicado: (2015)

The prediction of protein-protein interaction networks in rice blast fungus
por: He, Fei, et al.
Publicado: (2008)

Prediction of protein-protein interactions between viruses and human by an SVM model
por: Cui, Guangyu, et al.
Publicado: (2012)

Network-Based Comparative Analysis of Arabidopsis Immune Responses to Golovinomyces orontii and Botrytis cinerea Infections
por: Jiang, Zhenhong, et al.
Publicado: (2016)

Comparative interactomics for virus–human protein–protein interactions: DNA viruses versus RNA viruses
por: Durmuş, Saliha, et al.
Publicado: (2017)

Human immunodeficiency virus type 1, human protein interaction database at NCBI
por: Fu, William, et al.
Publicado: (2009)

Toward an Understanding of the Structural and Mechanistic Aspects of Protein-Protein Interactions in 2-Oxoacid Dehydrogenase Complexes
por: Nemeria, Natalia S., et al.
Publicado: (2021)

The Landscape of Human Proteins Interacting with Viruses and Other Pathogens
por: Dyer, Matthew D, et al.
Publicado: (2008)

Structural insights into the interactions and epigenetic functions of human nucleic acid repair protein ALKBH6
por: Ma, Lulu, et al.
Publicado: (2022)

Deep learning frameworks for protein–protein interaction prediction
por: Hu, Xiaotian, et al.
Publicado: (2022)

Network of Interactions between ZIKA Virus Non-Structural Proteins and Human Host Proteins
por: Golubeva, Volha A., et al.
Publicado: (2020)

Combining Bioinformatics and Biophysics to Understand Protein-Protein and Protein-Ligand Interactions
por: Honig, Barry
Publicado: (2002)

Graph-BERT and language model-based framework for protein–protein interaction identification
por: Jha, Kanchan, et al.
Publicado: (2023)

A Transformer-Based Ensemble Framework for the Prediction of Protein–Protein Interaction Sites
por: Mou, Minjie, et al.
Publicado: (2023)

Detecting Overlapping Protein Complexes by Rough-Fuzzy Clustering in Protein-Protein Interaction Networks
por: Wu, Hao, et al.
Publicado: (2014)

A new computational approach to analyze human protein complexes and predict novel protein interactions
por: Zanivan, Sara, et al.
Publicado: (2007)

Identifying protein complexes based on density and modularity in protein-protein interaction network
por: Ren, Jun, et al.
Publicado: (2013)

BEAN 2.0: an integrated web resource for the identification and functional analysis of type III secreted effectors
por: Dong, Xiaobao, et al.
Publicado: (2015)

Interaction of the Human Respiratory Syncytial Virus matrix protein with cellular adaptor protein complex 3 plays a critical role in trafficking
por: Ward, Casey, et al.
Publicado: (2017)

Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions
por: Schaefer, Martin H., et al.
Publicado: (2013)

Understanding the interactability of chikungunya virus proteins via molecular recognition feature analysis
por: Singh, Ankur, et al.
Publicado: (2018)

Human DDX56 protein interacts with influenza A virus NS1 protein and stimulates the virus replication
por: Pirinçal, Ayşegül, et al.
Publicado: (2021)

LSTM-PHV: prediction of human-virus protein–protein interactions by LSTM with word2vec
por: Tsukiyama, Sho, et al.
Publicado: (2021)

ProtInteract: A deep learning framework for predicting protein–protein interactions
por: Soleymani, Farzan, et al.
Publicado: (2023)

IDPpi: Protein-Protein Interaction Analyses of Human Intrinsically Disordered Proteins
por: Perovic, Vladimir, et al.
Publicado: (2018)

Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks
por: Liu, Xiaoxia, et al.
Publicado: (2018)

Understanding Dengue Virus Capsid Protein Interaction with Key Biological Targets
por: Faustino, André F., et al.
Publicado: (2015)

HMNPPID—human malignant neoplasm protein–protein interaction database
por: Li, Qingqing, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_8hh6n4qk33ep98dcq5d6r57vah