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Biomolecular Chemistry in Liquid Phase Separated Compartments

Biochemical processes inside the cell take place in a complex environment that is highly crowded, heterogeneous, and replete with interfaces. The recently recognized importance of biomolecular condensates in cellular organization has added new elements of complexity to our understanding of chemistry...

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Autores principales: Nakashima, Karina K., Vibhute, Mahesh A., Spruijt, Evan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456709/
https://www.ncbi.nlm.nih.gov/pubmed/31001538
http://dx.doi.org/10.3389/fmolb.2019.00021
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author Nakashima, Karina K.
Vibhute, Mahesh A.
Spruijt, Evan
author_facet Nakashima, Karina K.
Vibhute, Mahesh A.
Spruijt, Evan
author_sort Nakashima, Karina K.
collection PubMed
description Biochemical processes inside the cell take place in a complex environment that is highly crowded, heterogeneous, and replete with interfaces. The recently recognized importance of biomolecular condensates in cellular organization has added new elements of complexity to our understanding of chemistry in the cell. Many of these condensates are formed by liquid-liquid phase separation (LLPS) and behave like liquid droplets. Such droplet organelles can be reproduced and studied in vitro by using coacervates and have some remarkable features, including regulated assembly, differential partitioning of macromolecules, permeability to small molecules, and a uniquely crowded environment. Here, we review the main principles of biochemical organization in model membraneless compartments. We focus on some promising in vitro coacervate model systems that aptly mimic part of the compartmentalized cellular environment. We address the physicochemical characteristics of these liquid phase separated compartments, and their impact on biomolecular chemistry and assembly. These model systems enable a systematic investigation of the role of spatiotemporal organization of biomolecules in controlling biochemical processes in the cell, and they provide crucial insights for the development of functional artificial organelles and cells.
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spelling pubmed-64567092019-04-18 Biomolecular Chemistry in Liquid Phase Separated Compartments Nakashima, Karina K. Vibhute, Mahesh A. Spruijt, Evan Front Mol Biosci Molecular Biosciences Biochemical processes inside the cell take place in a complex environment that is highly crowded, heterogeneous, and replete with interfaces. The recently recognized importance of biomolecular condensates in cellular organization has added new elements of complexity to our understanding of chemistry in the cell. Many of these condensates are formed by liquid-liquid phase separation (LLPS) and behave like liquid droplets. Such droplet organelles can be reproduced and studied in vitro by using coacervates and have some remarkable features, including regulated assembly, differential partitioning of macromolecules, permeability to small molecules, and a uniquely crowded environment. Here, we review the main principles of biochemical organization in model membraneless compartments. We focus on some promising in vitro coacervate model systems that aptly mimic part of the compartmentalized cellular environment. We address the physicochemical characteristics of these liquid phase separated compartments, and their impact on biomolecular chemistry and assembly. These model systems enable a systematic investigation of the role of spatiotemporal organization of biomolecules in controlling biochemical processes in the cell, and they provide crucial insights for the development of functional artificial organelles and cells. Frontiers Media S.A. 2019-04-03 /pmc/articles/PMC6456709/ /pubmed/31001538 http://dx.doi.org/10.3389/fmolb.2019.00021 Text en Copyright © 2019 Nakashima, Vibhute and Spruijt. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Nakashima, Karina K.
Vibhute, Mahesh A.
Spruijt, Evan
Biomolecular Chemistry in Liquid Phase Separated Compartments
title Biomolecular Chemistry in Liquid Phase Separated Compartments
title_full Biomolecular Chemistry in Liquid Phase Separated Compartments
title_fullStr Biomolecular Chemistry in Liquid Phase Separated Compartments
title_full_unstemmed Biomolecular Chemistry in Liquid Phase Separated Compartments
title_short Biomolecular Chemistry in Liquid Phase Separated Compartments
title_sort biomolecular chemistry in liquid phase separated compartments
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456709/
https://www.ncbi.nlm.nih.gov/pubmed/31001538
http://dx.doi.org/10.3389/fmolb.2019.00021
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