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A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients

BACKGROUND: Glioblastoma (GBM) remains the most biologically aggressive subtype of gliomas with an average survival of 10 to 12 months. Considering that the overall survival (OS) of each GBM patient is a key factor in the treatment of individuals, it is meaningful to predict the survival probability...

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Autores principales: Wang, Lingchen, Yan, Zhengwei, He, Xiaona, Zhang, Cheng, Yu, Huiqiang, Lu, Quqin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456771/
https://www.ncbi.nlm.nih.gov/pubmed/30859746
http://dx.doi.org/10.1002/brb3.1258
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author Wang, Lingchen
Yan, Zhengwei
He, Xiaona
Zhang, Cheng
Yu, Huiqiang
Lu, Quqin
author_facet Wang, Lingchen
Yan, Zhengwei
He, Xiaona
Zhang, Cheng
Yu, Huiqiang
Lu, Quqin
author_sort Wang, Lingchen
collection PubMed
description BACKGROUND: Glioblastoma (GBM) remains the most biologically aggressive subtype of gliomas with an average survival of 10 to 12 months. Considering that the overall survival (OS) of each GBM patient is a key factor in the treatment of individuals, it is meaningful to predict the survival probability for GBM patients newly diagnosed in clinical practice. MATERIAL AND METHODS: Using the TCGA dataset and two independent GEO datasets, we identified genes that are associated with the OS and differentially expressed between GBM tissues and the adjacent normal tissues. A robust likelihood‐based survival modeling approach was applied to select the best genes for modeling. After the prognostic nomogram was generated, an independent dataset on different platform was used to evaluate its effectiveness. RESULTS: We identified 168 differentially expressed genes associated with the OS. Five of these genes were selected to generate a gene prognostic nomogram. The external validation demonstrated that 5‐gene prognostic nomogram has the capability of predicting the OS of GBM patients. CONCLUSION: We developed a novel and convenient prognostic tool based on five genes that exhibited clinical value in predicting the survival probability for newly diagnosed GBM patients, and all of these five genes could represent potential target genes for the treatment of GBM. The development of this model will provide a good reference for cancer researchers.
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spelling pubmed-64567712019-04-19 A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients Wang, Lingchen Yan, Zhengwei He, Xiaona Zhang, Cheng Yu, Huiqiang Lu, Quqin Brain Behav Original Research BACKGROUND: Glioblastoma (GBM) remains the most biologically aggressive subtype of gliomas with an average survival of 10 to 12 months. Considering that the overall survival (OS) of each GBM patient is a key factor in the treatment of individuals, it is meaningful to predict the survival probability for GBM patients newly diagnosed in clinical practice. MATERIAL AND METHODS: Using the TCGA dataset and two independent GEO datasets, we identified genes that are associated with the OS and differentially expressed between GBM tissues and the adjacent normal tissues. A robust likelihood‐based survival modeling approach was applied to select the best genes for modeling. After the prognostic nomogram was generated, an independent dataset on different platform was used to evaluate its effectiveness. RESULTS: We identified 168 differentially expressed genes associated with the OS. Five of these genes were selected to generate a gene prognostic nomogram. The external validation demonstrated that 5‐gene prognostic nomogram has the capability of predicting the OS of GBM patients. CONCLUSION: We developed a novel and convenient prognostic tool based on five genes that exhibited clinical value in predicting the survival probability for newly diagnosed GBM patients, and all of these five genes could represent potential target genes for the treatment of GBM. The development of this model will provide a good reference for cancer researchers. John Wiley and Sons Inc. 2019-03-11 /pmc/articles/PMC6456771/ /pubmed/30859746 http://dx.doi.org/10.1002/brb3.1258 Text en © 2019 The Authors. Brain and Behavior published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Wang, Lingchen
Yan, Zhengwei
He, Xiaona
Zhang, Cheng
Yu, Huiqiang
Lu, Quqin
A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients
title A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients
title_full A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients
title_fullStr A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients
title_full_unstemmed A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients
title_short A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients
title_sort 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456771/
https://www.ncbi.nlm.nih.gov/pubmed/30859746
http://dx.doi.org/10.1002/brb3.1258
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