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A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients
BACKGROUND: Glioblastoma (GBM) remains the most biologically aggressive subtype of gliomas with an average survival of 10 to 12 months. Considering that the overall survival (OS) of each GBM patient is a key factor in the treatment of individuals, it is meaningful to predict the survival probability...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456771/ https://www.ncbi.nlm.nih.gov/pubmed/30859746 http://dx.doi.org/10.1002/brb3.1258 |
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author | Wang, Lingchen Yan, Zhengwei He, Xiaona Zhang, Cheng Yu, Huiqiang Lu, Quqin |
author_facet | Wang, Lingchen Yan, Zhengwei He, Xiaona Zhang, Cheng Yu, Huiqiang Lu, Quqin |
author_sort | Wang, Lingchen |
collection | PubMed |
description | BACKGROUND: Glioblastoma (GBM) remains the most biologically aggressive subtype of gliomas with an average survival of 10 to 12 months. Considering that the overall survival (OS) of each GBM patient is a key factor in the treatment of individuals, it is meaningful to predict the survival probability for GBM patients newly diagnosed in clinical practice. MATERIAL AND METHODS: Using the TCGA dataset and two independent GEO datasets, we identified genes that are associated with the OS and differentially expressed between GBM tissues and the adjacent normal tissues. A robust likelihood‐based survival modeling approach was applied to select the best genes for modeling. After the prognostic nomogram was generated, an independent dataset on different platform was used to evaluate its effectiveness. RESULTS: We identified 168 differentially expressed genes associated with the OS. Five of these genes were selected to generate a gene prognostic nomogram. The external validation demonstrated that 5‐gene prognostic nomogram has the capability of predicting the OS of GBM patients. CONCLUSION: We developed a novel and convenient prognostic tool based on five genes that exhibited clinical value in predicting the survival probability for newly diagnosed GBM patients, and all of these five genes could represent potential target genes for the treatment of GBM. The development of this model will provide a good reference for cancer researchers. |
format | Online Article Text |
id | pubmed-6456771 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-64567712019-04-19 A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients Wang, Lingchen Yan, Zhengwei He, Xiaona Zhang, Cheng Yu, Huiqiang Lu, Quqin Brain Behav Original Research BACKGROUND: Glioblastoma (GBM) remains the most biologically aggressive subtype of gliomas with an average survival of 10 to 12 months. Considering that the overall survival (OS) of each GBM patient is a key factor in the treatment of individuals, it is meaningful to predict the survival probability for GBM patients newly diagnosed in clinical practice. MATERIAL AND METHODS: Using the TCGA dataset and two independent GEO datasets, we identified genes that are associated with the OS and differentially expressed between GBM tissues and the adjacent normal tissues. A robust likelihood‐based survival modeling approach was applied to select the best genes for modeling. After the prognostic nomogram was generated, an independent dataset on different platform was used to evaluate its effectiveness. RESULTS: We identified 168 differentially expressed genes associated with the OS. Five of these genes were selected to generate a gene prognostic nomogram. The external validation demonstrated that 5‐gene prognostic nomogram has the capability of predicting the OS of GBM patients. CONCLUSION: We developed a novel and convenient prognostic tool based on five genes that exhibited clinical value in predicting the survival probability for newly diagnosed GBM patients, and all of these five genes could represent potential target genes for the treatment of GBM. The development of this model will provide a good reference for cancer researchers. John Wiley and Sons Inc. 2019-03-11 /pmc/articles/PMC6456771/ /pubmed/30859746 http://dx.doi.org/10.1002/brb3.1258 Text en © 2019 The Authors. Brain and Behavior published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Wang, Lingchen Yan, Zhengwei He, Xiaona Zhang, Cheng Yu, Huiqiang Lu, Quqin A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients |
title | A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients |
title_full | A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients |
title_fullStr | A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients |
title_full_unstemmed | A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients |
title_short | A 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients |
title_sort | 5‐gene prognostic nomogram predicting survival probability of glioblastoma patients |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456771/ https://www.ncbi.nlm.nih.gov/pubmed/30859746 http://dx.doi.org/10.1002/brb3.1258 |
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