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Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma
OBJECTIVE: Machine learning techniques have demonstrated superior discrimination compared to conventional statistical approaches in predicting trauma death. The objective of this study is to evaluate whether machine learning algorithms can be used to assess risk and dynamically identify patient-spec...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6457612/ https://www.ncbi.nlm.nih.gov/pubmed/30970030 http://dx.doi.org/10.1371/journal.pone.0213836 |
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author | Christie, S. Ariane Conroy, Amanda S. Callcut, Rachael A. Hubbard, Alan E. Cohen, Mitchell J. |
author_facet | Christie, S. Ariane Conroy, Amanda S. Callcut, Rachael A. Hubbard, Alan E. Cohen, Mitchell J. |
author_sort | Christie, S. Ariane |
collection | PubMed |
description | OBJECTIVE: Machine learning techniques have demonstrated superior discrimination compared to conventional statistical approaches in predicting trauma death. The objective of this study is to evaluate whether machine learning algorithms can be used to assess risk and dynamically identify patient-specific modifiable factors critical to patient trajectory for multiple key outcomes after severe injury. METHODS: SuperLearner, an ensemble machine-learning algorithm, was applied to prospective observational cohort data from 1494 critically-injured patients. Over 1000 agnostic predictors were used to generate prediction models from multiple candidate learners for outcomes of interest at serial time points post-injury. Model accuracy was estimated using cross-validation and area under the curve was compared to select among predictors. Clinical variables responsible for driving outcomes were estimated at each time point. RESULTS: SuperLearner fits demonstrated excellent cross-validated prediction of death (overall AUC 0.94–0.97), multi-organ failure (overall AUC 0.84–0.90), and transfusion (overall AUC 0.87–0.9) across multiple post-injury time points, and good prediction of Acute Respiratory Distress Syndrome (overall AUC 0.84–0.89) and venous thromboembolism (overall AUC 0.73–0.83). Outcomes with inferior data quality included coagulopathic trajectory (AUC 0.48–0.88). Key clinical predictors evolved over the post-injury timecourse and included both anticipated and unexpected variables. Non-random missingness of data was identified as a predictor of multiple outcomes over time. CONCLUSIONS: Machine learning algorithms can be used to generate dynamic prediction after injury while avoiding the risk of over- and under-fitting inherent in ad hoc statistical approaches. SuperLearner prediction after injury demonstrates promise as an adaptable means of helping clinicians integrate voluminous, evolving data on severely-injured patients into real-time, dynamic decision-making support. |
format | Online Article Text |
id | pubmed-6457612 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-64576122019-05-03 Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma Christie, S. Ariane Conroy, Amanda S. Callcut, Rachael A. Hubbard, Alan E. Cohen, Mitchell J. PLoS One Research Article OBJECTIVE: Machine learning techniques have demonstrated superior discrimination compared to conventional statistical approaches in predicting trauma death. The objective of this study is to evaluate whether machine learning algorithms can be used to assess risk and dynamically identify patient-specific modifiable factors critical to patient trajectory for multiple key outcomes after severe injury. METHODS: SuperLearner, an ensemble machine-learning algorithm, was applied to prospective observational cohort data from 1494 critically-injured patients. Over 1000 agnostic predictors were used to generate prediction models from multiple candidate learners for outcomes of interest at serial time points post-injury. Model accuracy was estimated using cross-validation and area under the curve was compared to select among predictors. Clinical variables responsible for driving outcomes were estimated at each time point. RESULTS: SuperLearner fits demonstrated excellent cross-validated prediction of death (overall AUC 0.94–0.97), multi-organ failure (overall AUC 0.84–0.90), and transfusion (overall AUC 0.87–0.9) across multiple post-injury time points, and good prediction of Acute Respiratory Distress Syndrome (overall AUC 0.84–0.89) and venous thromboembolism (overall AUC 0.73–0.83). Outcomes with inferior data quality included coagulopathic trajectory (AUC 0.48–0.88). Key clinical predictors evolved over the post-injury timecourse and included both anticipated and unexpected variables. Non-random missingness of data was identified as a predictor of multiple outcomes over time. CONCLUSIONS: Machine learning algorithms can be used to generate dynamic prediction after injury while avoiding the risk of over- and under-fitting inherent in ad hoc statistical approaches. SuperLearner prediction after injury demonstrates promise as an adaptable means of helping clinicians integrate voluminous, evolving data on severely-injured patients into real-time, dynamic decision-making support. Public Library of Science 2019-04-10 /pmc/articles/PMC6457612/ /pubmed/30970030 http://dx.doi.org/10.1371/journal.pone.0213836 Text en © 2019 Christie et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Christie, S. Ariane Conroy, Amanda S. Callcut, Rachael A. Hubbard, Alan E. Cohen, Mitchell J. Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma |
title | Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma |
title_full | Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma |
title_fullStr | Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma |
title_full_unstemmed | Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma |
title_short | Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma |
title_sort | dynamic multi-outcome prediction after injury: applying adaptive machine learning for precision medicine in trauma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6457612/ https://www.ncbi.nlm.nih.gov/pubmed/30970030 http://dx.doi.org/10.1371/journal.pone.0213836 |
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