Cargando…

Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma

OBJECTIVE: Machine learning techniques have demonstrated superior discrimination compared to conventional statistical approaches in predicting trauma death. The objective of this study is to evaluate whether machine learning algorithms can be used to assess risk and dynamically identify patient-spec...

Descripción completa

Detalles Bibliográficos
Autores principales: Christie, S. Ariane, Conroy, Amanda S., Callcut, Rachael A., Hubbard, Alan E., Cohen, Mitchell J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6457612/
https://www.ncbi.nlm.nih.gov/pubmed/30970030
http://dx.doi.org/10.1371/journal.pone.0213836
_version_ 1783409924668129280
author Christie, S. Ariane
Conroy, Amanda S.
Callcut, Rachael A.
Hubbard, Alan E.
Cohen, Mitchell J.
author_facet Christie, S. Ariane
Conroy, Amanda S.
Callcut, Rachael A.
Hubbard, Alan E.
Cohen, Mitchell J.
author_sort Christie, S. Ariane
collection PubMed
description OBJECTIVE: Machine learning techniques have demonstrated superior discrimination compared to conventional statistical approaches in predicting trauma death. The objective of this study is to evaluate whether machine learning algorithms can be used to assess risk and dynamically identify patient-specific modifiable factors critical to patient trajectory for multiple key outcomes after severe injury. METHODS: SuperLearner, an ensemble machine-learning algorithm, was applied to prospective observational cohort data from 1494 critically-injured patients. Over 1000 agnostic predictors were used to generate prediction models from multiple candidate learners for outcomes of interest at serial time points post-injury. Model accuracy was estimated using cross-validation and area under the curve was compared to select among predictors. Clinical variables responsible for driving outcomes were estimated at each time point. RESULTS: SuperLearner fits demonstrated excellent cross-validated prediction of death (overall AUC 0.94–0.97), multi-organ failure (overall AUC 0.84–0.90), and transfusion (overall AUC 0.87–0.9) across multiple post-injury time points, and good prediction of Acute Respiratory Distress Syndrome (overall AUC 0.84–0.89) and venous thromboembolism (overall AUC 0.73–0.83). Outcomes with inferior data quality included coagulopathic trajectory (AUC 0.48–0.88). Key clinical predictors evolved over the post-injury timecourse and included both anticipated and unexpected variables. Non-random missingness of data was identified as a predictor of multiple outcomes over time. CONCLUSIONS: Machine learning algorithms can be used to generate dynamic prediction after injury while avoiding the risk of over- and under-fitting inherent in ad hoc statistical approaches. SuperLearner prediction after injury demonstrates promise as an adaptable means of helping clinicians integrate voluminous, evolving data on severely-injured patients into real-time, dynamic decision-making support.
format Online
Article
Text
id pubmed-6457612
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-64576122019-05-03 Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma Christie, S. Ariane Conroy, Amanda S. Callcut, Rachael A. Hubbard, Alan E. Cohen, Mitchell J. PLoS One Research Article OBJECTIVE: Machine learning techniques have demonstrated superior discrimination compared to conventional statistical approaches in predicting trauma death. The objective of this study is to evaluate whether machine learning algorithms can be used to assess risk and dynamically identify patient-specific modifiable factors critical to patient trajectory for multiple key outcomes after severe injury. METHODS: SuperLearner, an ensemble machine-learning algorithm, was applied to prospective observational cohort data from 1494 critically-injured patients. Over 1000 agnostic predictors were used to generate prediction models from multiple candidate learners for outcomes of interest at serial time points post-injury. Model accuracy was estimated using cross-validation and area under the curve was compared to select among predictors. Clinical variables responsible for driving outcomes were estimated at each time point. RESULTS: SuperLearner fits demonstrated excellent cross-validated prediction of death (overall AUC 0.94–0.97), multi-organ failure (overall AUC 0.84–0.90), and transfusion (overall AUC 0.87–0.9) across multiple post-injury time points, and good prediction of Acute Respiratory Distress Syndrome (overall AUC 0.84–0.89) and venous thromboembolism (overall AUC 0.73–0.83). Outcomes with inferior data quality included coagulopathic trajectory (AUC 0.48–0.88). Key clinical predictors evolved over the post-injury timecourse and included both anticipated and unexpected variables. Non-random missingness of data was identified as a predictor of multiple outcomes over time. CONCLUSIONS: Machine learning algorithms can be used to generate dynamic prediction after injury while avoiding the risk of over- and under-fitting inherent in ad hoc statistical approaches. SuperLearner prediction after injury demonstrates promise as an adaptable means of helping clinicians integrate voluminous, evolving data on severely-injured patients into real-time, dynamic decision-making support. Public Library of Science 2019-04-10 /pmc/articles/PMC6457612/ /pubmed/30970030 http://dx.doi.org/10.1371/journal.pone.0213836 Text en © 2019 Christie et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Christie, S. Ariane
Conroy, Amanda S.
Callcut, Rachael A.
Hubbard, Alan E.
Cohen, Mitchell J.
Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma
title Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma
title_full Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma
title_fullStr Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma
title_full_unstemmed Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma
title_short Dynamic multi-outcome prediction after injury: Applying adaptive machine learning for precision medicine in trauma
title_sort dynamic multi-outcome prediction after injury: applying adaptive machine learning for precision medicine in trauma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6457612/
https://www.ncbi.nlm.nih.gov/pubmed/30970030
http://dx.doi.org/10.1371/journal.pone.0213836
work_keys_str_mv AT christiesariane dynamicmultioutcomepredictionafterinjuryapplyingadaptivemachinelearningforprecisionmedicineintrauma
AT conroyamandas dynamicmultioutcomepredictionafterinjuryapplyingadaptivemachinelearningforprecisionmedicineintrauma
AT callcutrachaela dynamicmultioutcomepredictionafterinjuryapplyingadaptivemachinelearningforprecisionmedicineintrauma
AT hubbardalane dynamicmultioutcomepredictionafterinjuryapplyingadaptivemachinelearningforprecisionmedicineintrauma
AT cohenmitchellj dynamicmultioutcomepredictionafterinjuryapplyingadaptivemachinelearningforprecisionmedicineintrauma