Cargando…

Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants

Circular patterns called “fairy rings” in fields are a natural phenomenon that arises through the interaction between basidiomycete fungi and plants. Acceleration or inhibition of plant vegetative growth and the formation of mushroom fruiting bodies are both commonly observed when fairy rings form....

Descripción completa

Detalles Bibliográficos
Autores principales: Takano, Tomoyuki, Yamamoto, Naoki, Suzuki, Tomohiro, Dohra, Hideo, Choi, Jae-Hoon, Terashima, Yurika, Yokoyama, Koji, Kawagishi, Hirokazu, Yano, Kentaro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6458111/
https://www.ncbi.nlm.nih.gov/pubmed/30971747
http://dx.doi.org/10.1038/s41598-019-42231-9
_version_ 1783409943962976256
author Takano, Tomoyuki
Yamamoto, Naoki
Suzuki, Tomohiro
Dohra, Hideo
Choi, Jae-Hoon
Terashima, Yurika
Yokoyama, Koji
Kawagishi, Hirokazu
Yano, Kentaro
author_facet Takano, Tomoyuki
Yamamoto, Naoki
Suzuki, Tomohiro
Dohra, Hideo
Choi, Jae-Hoon
Terashima, Yurika
Yokoyama, Koji
Kawagishi, Hirokazu
Yano, Kentaro
author_sort Takano, Tomoyuki
collection PubMed
description Circular patterns called “fairy rings” in fields are a natural phenomenon that arises through the interaction between basidiomycete fungi and plants. Acceleration or inhibition of plant vegetative growth and the formation of mushroom fruiting bodies are both commonly observed when fairy rings form. The gene of an enzyme involved in the biosynthesis of these regulators was recently isolated in the fairy ring-forming fungus, Lepista sordida. To identify other genes involved in L. sordida fairy ring formation, we used previously generated sequence data to produce a more complete draft genome sequence for this species. Finally, we predicted the metabolic pathways of the plant growth regulators and 29 candidate enzyme-coding genes involved in fairy-ring formation based on gene annotations. Comparisons of protein coding genes among basidiomycete fungi revealed two nitric oxide synthase gene candidates that were uniquely encoded in genomes of fairy ring-forming fungi. These results provide a basis for the discovery of genes involved in fairy ring formation and for understanding the mechanisms involved in the interaction between fungi and plants. We also constructed a new web database F-RINGS (http://bioinf.mind.meiji.ac.jp/f-rings/) to provide the comprehensive genomic information for L. sordida.
format Online
Article
Text
id pubmed-6458111
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-64581112019-04-15 Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants Takano, Tomoyuki Yamamoto, Naoki Suzuki, Tomohiro Dohra, Hideo Choi, Jae-Hoon Terashima, Yurika Yokoyama, Koji Kawagishi, Hirokazu Yano, Kentaro Sci Rep Article Circular patterns called “fairy rings” in fields are a natural phenomenon that arises through the interaction between basidiomycete fungi and plants. Acceleration or inhibition of plant vegetative growth and the formation of mushroom fruiting bodies are both commonly observed when fairy rings form. The gene of an enzyme involved in the biosynthesis of these regulators was recently isolated in the fairy ring-forming fungus, Lepista sordida. To identify other genes involved in L. sordida fairy ring formation, we used previously generated sequence data to produce a more complete draft genome sequence for this species. Finally, we predicted the metabolic pathways of the plant growth regulators and 29 candidate enzyme-coding genes involved in fairy-ring formation based on gene annotations. Comparisons of protein coding genes among basidiomycete fungi revealed two nitric oxide synthase gene candidates that were uniquely encoded in genomes of fairy ring-forming fungi. These results provide a basis for the discovery of genes involved in fairy ring formation and for understanding the mechanisms involved in the interaction between fungi and plants. We also constructed a new web database F-RINGS (http://bioinf.mind.meiji.ac.jp/f-rings/) to provide the comprehensive genomic information for L. sordida. Nature Publishing Group UK 2019-04-10 /pmc/articles/PMC6458111/ /pubmed/30971747 http://dx.doi.org/10.1038/s41598-019-42231-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Takano, Tomoyuki
Yamamoto, Naoki
Suzuki, Tomohiro
Dohra, Hideo
Choi, Jae-Hoon
Terashima, Yurika
Yokoyama, Koji
Kawagishi, Hirokazu
Yano, Kentaro
Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants
title Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants
title_full Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants
title_fullStr Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants
title_full_unstemmed Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants
title_short Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants
title_sort genome sequence analysis of the fairy ring-forming fungus lepista sordida and gene candidates for interaction with plants
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6458111/
https://www.ncbi.nlm.nih.gov/pubmed/30971747
http://dx.doi.org/10.1038/s41598-019-42231-9
work_keys_str_mv AT takanotomoyuki genomesequenceanalysisofthefairyringformingfunguslepistasordidaandgenecandidatesforinteractionwithplants
AT yamamotonaoki genomesequenceanalysisofthefairyringformingfunguslepistasordidaandgenecandidatesforinteractionwithplants
AT suzukitomohiro genomesequenceanalysisofthefairyringformingfunguslepistasordidaandgenecandidatesforinteractionwithplants
AT dohrahideo genomesequenceanalysisofthefairyringformingfunguslepistasordidaandgenecandidatesforinteractionwithplants
AT choijaehoon genomesequenceanalysisofthefairyringformingfunguslepistasordidaandgenecandidatesforinteractionwithplants
AT terashimayurika genomesequenceanalysisofthefairyringformingfunguslepistasordidaandgenecandidatesforinteractionwithplants
AT yokoyamakoji genomesequenceanalysisofthefairyringformingfunguslepistasordidaandgenecandidatesforinteractionwithplants
AT kawagishihirokazu genomesequenceanalysisofthefairyringformingfunguslepistasordidaandgenecandidatesforinteractionwithplants
AT yanokentaro genomesequenceanalysisofthefairyringformingfunguslepistasordidaandgenecandidatesforinteractionwithplants