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Quantifying dissipation using fluctuating currents

Systems coupled to multiple thermodynamic reservoirs can exhibit nonequilibrium dynamics, breaking detailed balance to generate currents. To power these currents, the entropy of the reservoirs increases. The rate of entropy production, or dissipation, is a measure of the statistical irreversibility...

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Detalles Bibliográficos
Autores principales: Li, Junang, Horowitz, Jordan M., Gingrich, Todd R., Fakhri, Nikta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6458151/
https://www.ncbi.nlm.nih.gov/pubmed/30971687
http://dx.doi.org/10.1038/s41467-019-09631-x
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author Li, Junang
Horowitz, Jordan M.
Gingrich, Todd R.
Fakhri, Nikta
author_facet Li, Junang
Horowitz, Jordan M.
Gingrich, Todd R.
Fakhri, Nikta
author_sort Li, Junang
collection PubMed
description Systems coupled to multiple thermodynamic reservoirs can exhibit nonequilibrium dynamics, breaking detailed balance to generate currents. To power these currents, the entropy of the reservoirs increases. The rate of entropy production, or dissipation, is a measure of the statistical irreversibility of the nonequilibrium process. By measuring this irreversibility in several biological systems, recent experiments have detected that particular systems are not in equilibrium. Here we discuss three strategies to replace binary classification (equilibrium versus nonequilibrium) with a quantification of the entropy production rate. To illustrate, we generate time-series data for the evolution of an analytically tractable bead-spring model. Probability currents can be inferred and utilized to indirectly quantify the entropy production rate, but this approach requires prohibitive amounts of data in high-dimensional systems. This curse of dimensionality can be partially mitigated by using the thermodynamic uncertainty relation to bound the entropy production rate using statistical fluctuations in the probability currents.
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spelling pubmed-64581512019-04-12 Quantifying dissipation using fluctuating currents Li, Junang Horowitz, Jordan M. Gingrich, Todd R. Fakhri, Nikta Nat Commun Article Systems coupled to multiple thermodynamic reservoirs can exhibit nonequilibrium dynamics, breaking detailed balance to generate currents. To power these currents, the entropy of the reservoirs increases. The rate of entropy production, or dissipation, is a measure of the statistical irreversibility of the nonequilibrium process. By measuring this irreversibility in several biological systems, recent experiments have detected that particular systems are not in equilibrium. Here we discuss three strategies to replace binary classification (equilibrium versus nonequilibrium) with a quantification of the entropy production rate. To illustrate, we generate time-series data for the evolution of an analytically tractable bead-spring model. Probability currents can be inferred and utilized to indirectly quantify the entropy production rate, but this approach requires prohibitive amounts of data in high-dimensional systems. This curse of dimensionality can be partially mitigated by using the thermodynamic uncertainty relation to bound the entropy production rate using statistical fluctuations in the probability currents. Nature Publishing Group UK 2019-04-10 /pmc/articles/PMC6458151/ /pubmed/30971687 http://dx.doi.org/10.1038/s41467-019-09631-x Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Li, Junang
Horowitz, Jordan M.
Gingrich, Todd R.
Fakhri, Nikta
Quantifying dissipation using fluctuating currents
title Quantifying dissipation using fluctuating currents
title_full Quantifying dissipation using fluctuating currents
title_fullStr Quantifying dissipation using fluctuating currents
title_full_unstemmed Quantifying dissipation using fluctuating currents
title_short Quantifying dissipation using fluctuating currents
title_sort quantifying dissipation using fluctuating currents
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6458151/
https://www.ncbi.nlm.nih.gov/pubmed/30971687
http://dx.doi.org/10.1038/s41467-019-09631-x
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