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Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation

OBJECTIVE: Zero-valent iron sand filtration can remove multiple contaminants, including some types of pathogenic bacteria, from contaminated water. However, its efficacy at removing complex viral populations, such as those found in reclaimed water used for agricultural irrigation, has not been fully...

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Autores principales: Chopyk, Jessica, Kulkarni, Prachi, Nasko, Daniel J., Bradshaw, Rhodel, Kniel, Kalmia E., Chiu, Pei, Sharma, Manan, Sapkota, Amy R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6458639/
https://www.ncbi.nlm.nih.gov/pubmed/30975220
http://dx.doi.org/10.1186/s13104-019-4251-y
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author Chopyk, Jessica
Kulkarni, Prachi
Nasko, Daniel J.
Bradshaw, Rhodel
Kniel, Kalmia E.
Chiu, Pei
Sharma, Manan
Sapkota, Amy R.
author_facet Chopyk, Jessica
Kulkarni, Prachi
Nasko, Daniel J.
Bradshaw, Rhodel
Kniel, Kalmia E.
Chiu, Pei
Sharma, Manan
Sapkota, Amy R.
author_sort Chopyk, Jessica
collection PubMed
description OBJECTIVE: Zero-valent iron sand filtration can remove multiple contaminants, including some types of pathogenic bacteria, from contaminated water. However, its efficacy at removing complex viral populations, such as those found in reclaimed water used for agricultural irrigation, has not been fully evaluated. Therefore, this study utilized metagenomic sequencing and epifluorescent microscopy to enumerate and characterize viral populations found in reclaimed water and zero-valent iron-sand filtered reclaimed water sampled three times during a larger greenhouse study. RESULTS: Zero-valent iron-sand filtered reclaimed water samples had significantly less virus-like particles than reclaimed water samples at all collection dates, with the reclaimed water averaging between 10(8) and 10(9) and the zero-valent iron-sand filtered reclaimed water averaging between 10(6) and 10(7) virus-like particles per mL. In addition, for both sample types, viral metagenomes (viromes) were dominated by bacteriophages of the order Caudovirales, largely Siphoviridae, and genes related to DNA metabolism. However, the proportion of sequences homologous to bacteria, as well as the abundance of genes possibly originating from a bacterial host, was higher in the viromes of zero-valent iron-sand filtered reclaimed water samples. Overall, zero-valent iron-sand filtered reclaimed water had a lower total concentration of virus-like particles and a different virome community composition compared to unfiltered reclaimed water. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13104-019-4251-y) contains supplementary material, which is available to authorized users.
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spelling pubmed-64586392019-04-19 Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation Chopyk, Jessica Kulkarni, Prachi Nasko, Daniel J. Bradshaw, Rhodel Kniel, Kalmia E. Chiu, Pei Sharma, Manan Sapkota, Amy R. BMC Res Notes Research Note OBJECTIVE: Zero-valent iron sand filtration can remove multiple contaminants, including some types of pathogenic bacteria, from contaminated water. However, its efficacy at removing complex viral populations, such as those found in reclaimed water used for agricultural irrigation, has not been fully evaluated. Therefore, this study utilized metagenomic sequencing and epifluorescent microscopy to enumerate and characterize viral populations found in reclaimed water and zero-valent iron-sand filtered reclaimed water sampled three times during a larger greenhouse study. RESULTS: Zero-valent iron-sand filtered reclaimed water samples had significantly less virus-like particles than reclaimed water samples at all collection dates, with the reclaimed water averaging between 10(8) and 10(9) and the zero-valent iron-sand filtered reclaimed water averaging between 10(6) and 10(7) virus-like particles per mL. In addition, for both sample types, viral metagenomes (viromes) were dominated by bacteriophages of the order Caudovirales, largely Siphoviridae, and genes related to DNA metabolism. However, the proportion of sequences homologous to bacteria, as well as the abundance of genes possibly originating from a bacterial host, was higher in the viromes of zero-valent iron-sand filtered reclaimed water samples. Overall, zero-valent iron-sand filtered reclaimed water had a lower total concentration of virus-like particles and a different virome community composition compared to unfiltered reclaimed water. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13104-019-4251-y) contains supplementary material, which is available to authorized users. BioMed Central 2019-04-11 /pmc/articles/PMC6458639/ /pubmed/30975220 http://dx.doi.org/10.1186/s13104-019-4251-y Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Note
Chopyk, Jessica
Kulkarni, Prachi
Nasko, Daniel J.
Bradshaw, Rhodel
Kniel, Kalmia E.
Chiu, Pei
Sharma, Manan
Sapkota, Amy R.
Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation
title Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation
title_full Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation
title_fullStr Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation
title_full_unstemmed Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation
title_short Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation
title_sort zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6458639/
https://www.ncbi.nlm.nih.gov/pubmed/30975220
http://dx.doi.org/10.1186/s13104-019-4251-y
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