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A Novel CNN-Based CAD System for Early Assessment of Transplanted Kidney Dysfunction

This paper introduces a deep-learning based computer-aided diagnostic (CAD) system for the early detection of acute renal transplant rejection. For noninvasive detection of kidney rejection at an early stage, the proposed CAD system is based on the fusion of both imaging markers and clinical biomark...

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Autores principales: Abdeltawab, Hisham, Shehata, Mohamed, Shalaby, Ahmed, Khalifa, Fahmi, Mahmoud, Ali, El-Ghar, Mohamed Abou, Dwyer, Amy C., Ghazal, Mohammed, Hajjdiab, Hassan, Keynton, Robert, El-Baz, Ayman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6459833/
https://www.ncbi.nlm.nih.gov/pubmed/30976081
http://dx.doi.org/10.1038/s41598-019-42431-3
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author Abdeltawab, Hisham
Shehata, Mohamed
Shalaby, Ahmed
Khalifa, Fahmi
Mahmoud, Ali
El-Ghar, Mohamed Abou
Dwyer, Amy C.
Ghazal, Mohammed
Hajjdiab, Hassan
Keynton, Robert
El-Baz, Ayman
author_facet Abdeltawab, Hisham
Shehata, Mohamed
Shalaby, Ahmed
Khalifa, Fahmi
Mahmoud, Ali
El-Ghar, Mohamed Abou
Dwyer, Amy C.
Ghazal, Mohammed
Hajjdiab, Hassan
Keynton, Robert
El-Baz, Ayman
author_sort Abdeltawab, Hisham
collection PubMed
description This paper introduces a deep-learning based computer-aided diagnostic (CAD) system for the early detection of acute renal transplant rejection. For noninvasive detection of kidney rejection at an early stage, the proposed CAD system is based on the fusion of both imaging markers and clinical biomarkers. The former are derived from diffusion-weighted magnetic resonance imaging (DW-MRI) by estimating the apparent diffusion coefficients (ADC) representing the perfusion of the blood and the diffusion of the water inside the transplanted kidney. The clinical biomarkers, namely: creatinine clearance (CrCl) and serum plasma creatinine (SPCr), are integrated into the proposed CAD system as kidney functionality indexes to enhance its diagnostic performance. The ADC maps are estimated for a user-defined region of interest (ROI) that encompasses the whole kidney. The estimated ADCs are fused with the clinical biomarkers and the fused data is then used as an input to train and test a convolutional neural network (CNN) based classifier. The CAD system is tested on DW-MRI scans collected from 56 subjects from geographically diverse populations and different scanner types/image collection protocols. The overall accuracy of the proposed system is 92.9% with 93.3% sensitivity and 92.3% specificity in distinguishing non-rejected kidney transplants from rejected ones. These results demonstrate the potential of the proposed system for a reliable non-invasive diagnosis of renal transplant status for any DW-MRI scans, regardless of the geographical differences and/or imaging protocol.
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spelling pubmed-64598332019-04-16 A Novel CNN-Based CAD System for Early Assessment of Transplanted Kidney Dysfunction Abdeltawab, Hisham Shehata, Mohamed Shalaby, Ahmed Khalifa, Fahmi Mahmoud, Ali El-Ghar, Mohamed Abou Dwyer, Amy C. Ghazal, Mohammed Hajjdiab, Hassan Keynton, Robert El-Baz, Ayman Sci Rep Article This paper introduces a deep-learning based computer-aided diagnostic (CAD) system for the early detection of acute renal transplant rejection. For noninvasive detection of kidney rejection at an early stage, the proposed CAD system is based on the fusion of both imaging markers and clinical biomarkers. The former are derived from diffusion-weighted magnetic resonance imaging (DW-MRI) by estimating the apparent diffusion coefficients (ADC) representing the perfusion of the blood and the diffusion of the water inside the transplanted kidney. The clinical biomarkers, namely: creatinine clearance (CrCl) and serum plasma creatinine (SPCr), are integrated into the proposed CAD system as kidney functionality indexes to enhance its diagnostic performance. The ADC maps are estimated for a user-defined region of interest (ROI) that encompasses the whole kidney. The estimated ADCs are fused with the clinical biomarkers and the fused data is then used as an input to train and test a convolutional neural network (CNN) based classifier. The CAD system is tested on DW-MRI scans collected from 56 subjects from geographically diverse populations and different scanner types/image collection protocols. The overall accuracy of the proposed system is 92.9% with 93.3% sensitivity and 92.3% specificity in distinguishing non-rejected kidney transplants from rejected ones. These results demonstrate the potential of the proposed system for a reliable non-invasive diagnosis of renal transplant status for any DW-MRI scans, regardless of the geographical differences and/or imaging protocol. Nature Publishing Group UK 2019-04-11 /pmc/articles/PMC6459833/ /pubmed/30976081 http://dx.doi.org/10.1038/s41598-019-42431-3 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Abdeltawab, Hisham
Shehata, Mohamed
Shalaby, Ahmed
Khalifa, Fahmi
Mahmoud, Ali
El-Ghar, Mohamed Abou
Dwyer, Amy C.
Ghazal, Mohammed
Hajjdiab, Hassan
Keynton, Robert
El-Baz, Ayman
A Novel CNN-Based CAD System for Early Assessment of Transplanted Kidney Dysfunction
title A Novel CNN-Based CAD System for Early Assessment of Transplanted Kidney Dysfunction
title_full A Novel CNN-Based CAD System for Early Assessment of Transplanted Kidney Dysfunction
title_fullStr A Novel CNN-Based CAD System for Early Assessment of Transplanted Kidney Dysfunction
title_full_unstemmed A Novel CNN-Based CAD System for Early Assessment of Transplanted Kidney Dysfunction
title_short A Novel CNN-Based CAD System for Early Assessment of Transplanted Kidney Dysfunction
title_sort novel cnn-based cad system for early assessment of transplanted kidney dysfunction
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6459833/
https://www.ncbi.nlm.nih.gov/pubmed/30976081
http://dx.doi.org/10.1038/s41598-019-42431-3
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