omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata Collection

Metabolomics is a powerful tool for measuring the functional output of the microbiota. Currently, there are few established workflows for analysis downstream of metabolite identification. Here, we introduce omu, an R package designed for assigning compound hierarchies and linking compounds to corres...

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Detalles Bibliográficos
Autores principales: Tiffany, Connor R., Bäumler, Andreas J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2019
Materias:
Databases and Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6460029/
https://www.ncbi.nlm.nih.gov/pubmed/30975806
http://dx.doi.org/10.1128/MRA.00129-19
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author Tiffany, Connor R.
Bäumler, Andreas J.
author_facet Tiffany, Connor R.
Bäumler, Andreas J.
author_sort Tiffany, Connor R.
collection PubMed
description Metabolomics is a powerful tool for measuring the functional output of the microbiota. Currently, there are few established workflows for analysis downstream of metabolite identification. Here, we introduce omu, an R package designed for assigning compound hierarchies and linking compounds to corresponding enzyme and gene annotations for organisms of interest.
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spelling pubmed-64600292019-04-24 omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata Collection Tiffany, Connor R. Bäumler, Andreas J. Microbiol Resour Announc Databases and Software Metabolomics is a powerful tool for measuring the functional output of the microbiota. Currently, there are few established workflows for analysis downstream of metabolite identification. Here, we introduce omu, an R package designed for assigning compound hierarchies and linking compounds to corresponding enzyme and gene annotations for organisms of interest. American Society for Microbiology 2019-04-11 /pmc/articles/PMC6460029/ /pubmed/30975806 http://dx.doi.org/10.1128/MRA.00129-19 Text en Copyright © 2019 Tiffany and Bäumler. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Databases and Software
Tiffany, Connor R.
Bäumler, Andreas J.
omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata Collection
title omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata Collection
title_full omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata Collection
title_fullStr omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata Collection
title_full_unstemmed omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata Collection
title_short omu, a Metabolomics Count Data Analysis Tool for Intuitive Figures and Convenient Metadata Collection
title_sort omu, a metabolomics count data analysis tool for intuitive figures and convenient metadata collection
topic Databases and Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6460029/
https://www.ncbi.nlm.nih.gov/pubmed/30975806
http://dx.doi.org/10.1128/MRA.00129-19
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