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The index of prediction accuracy: an intuitive measure useful for evaluating risk prediction models
BACKGROUND: Many measures of prediction accuracy have been developed. However, the most popular ones in typical medical outcome prediction settings require additional investigation of calibration. METHODS: We show how rescaling the Brier score produces a measure that combines discrimination and cali...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6460739/ https://www.ncbi.nlm.nih.gov/pubmed/31093557 http://dx.doi.org/10.1186/s41512-018-0029-2 |
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author | Kattan, Michael W. Gerds, Thomas A. |
author_facet | Kattan, Michael W. Gerds, Thomas A. |
author_sort | Kattan, Michael W. |
collection | PubMed |
description | BACKGROUND: Many measures of prediction accuracy have been developed. However, the most popular ones in typical medical outcome prediction settings require additional investigation of calibration. METHODS: We show how rescaling the Brier score produces a measure that combines discrimination and calibration in one value and improves interpretability by adjusting for a benchmark model. We have called this measure the index of prediction accuracy (IPA). The IPA permits a common interpretation across binary, time to event, and competing risk outcomes. We illustrate this measure using example datasets. RESULTS: The IPA is simple to compute, and example code is provided. The values of the IPA appear very interpretable. CONCLUSIONS: IPA should be a prominent measure reported in studies of medical prediction model performance. However, IPA is only a measure of average performance and, by default, does not measure the utility of a medical decision. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s41512-018-0029-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6460739 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-64607392019-05-15 The index of prediction accuracy: an intuitive measure useful for evaluating risk prediction models Kattan, Michael W. Gerds, Thomas A. Diagn Progn Res Methodology BACKGROUND: Many measures of prediction accuracy have been developed. However, the most popular ones in typical medical outcome prediction settings require additional investigation of calibration. METHODS: We show how rescaling the Brier score produces a measure that combines discrimination and calibration in one value and improves interpretability by adjusting for a benchmark model. We have called this measure the index of prediction accuracy (IPA). The IPA permits a common interpretation across binary, time to event, and competing risk outcomes. We illustrate this measure using example datasets. RESULTS: The IPA is simple to compute, and example code is provided. The values of the IPA appear very interpretable. CONCLUSIONS: IPA should be a prominent measure reported in studies of medical prediction model performance. However, IPA is only a measure of average performance and, by default, does not measure the utility of a medical decision. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s41512-018-0029-2) contains supplementary material, which is available to authorized users. BioMed Central 2018-05-04 /pmc/articles/PMC6460739/ /pubmed/31093557 http://dx.doi.org/10.1186/s41512-018-0029-2 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Methodology Kattan, Michael W. Gerds, Thomas A. The index of prediction accuracy: an intuitive measure useful for evaluating risk prediction models |
title | The index of prediction accuracy: an intuitive measure useful for evaluating risk prediction models |
title_full | The index of prediction accuracy: an intuitive measure useful for evaluating risk prediction models |
title_fullStr | The index of prediction accuracy: an intuitive measure useful for evaluating risk prediction models |
title_full_unstemmed | The index of prediction accuracy: an intuitive measure useful for evaluating risk prediction models |
title_short | The index of prediction accuracy: an intuitive measure useful for evaluating risk prediction models |
title_sort | index of prediction accuracy: an intuitive measure useful for evaluating risk prediction models |
topic | Methodology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6460739/ https://www.ncbi.nlm.nih.gov/pubmed/31093557 http://dx.doi.org/10.1186/s41512-018-0029-2 |
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