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A novel method for interrogating receiver operating characteristic curves for assessing prognostic tests
BACKGROUND: Disease prevalence is rarely explicitly considered in the early stages of the development of novel prognostic tests. Rather, researchers use the area under the receiver operating characteristic (AUROC) as the key metric to gauge and report predictive performance ability. Because this sta...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6460848/ https://www.ncbi.nlm.nih.gov/pubmed/31093546 http://dx.doi.org/10.1186/s41512-017-0017-y |
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author | Thomas, Grégoire Kenny, Louise C. Baker, Philip N. Tuytten, Robin |
author_facet | Thomas, Grégoire Kenny, Louise C. Baker, Philip N. Tuytten, Robin |
author_sort | Thomas, Grégoire |
collection | PubMed |
description | BACKGROUND: Disease prevalence is rarely explicitly considered in the early stages of the development of novel prognostic tests. Rather, researchers use the area under the receiver operating characteristic (AUROC) as the key metric to gauge and report predictive performance ability. Because this statistic does not account for disease prevalence, proposed tests may not appropriately address clinical requirements. This ultimately impedes the translation of prognostic tests into clinical practice. METHODS: A method to express positive- and/or negative predictive value criteria (PPV, NPV) within the ROC space is presented. Equations are derived for so-called equi-PPV (and equi-NPV) lines. Herewith it is possible, for any given prevalence, to plot a series of sensitivity-specificity pairs which meet a specified PPV (or NPV) criterion onto the ROC space. This concept is introduced by firstly reviewing the well-established “mechanics”, strengths and limitations of the ROC analysis in the context of developing prognostic models. Then, the use of PPV (and/or) NPV criteria to augment the ROC analysis is elaborated. Additionally, an interactive web tool was also created to enable people to explore the dynamics of lines of equi-predictive value in function of prevalence. The web tool also allows to gauge what ROC curve shapes best meet specific positive and/or negative predictive value criteria (http://d4ta.link/ppvnpv/). RESULTS: To illustrate the merits and implications of this concept, an example on the prediction of pre-eclampsia risk in low-risk nulliparous pregnancies is elaborated. CONCLUSIONS: In risk stratification, the clinical usefulness of a prognostic test can be expressed in positive- and negative predictive value criteria; the development of novel prognostic tests will be facilitated by the possibility to co-visualise such criteria together with ROC curves. To achieve clinically meaningful risk stratification, the development of separate tests to meet either a pre-specified positive value (rule-in) or a negative predictive value (rule-out) criteria should be considered: the characteristics of successful rule-in and rule-out tests may markedly differ. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s41512-017-0017-y) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6460848 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-64608482019-05-15 A novel method for interrogating receiver operating characteristic curves for assessing prognostic tests Thomas, Grégoire Kenny, Louise C. Baker, Philip N. Tuytten, Robin Diagn Progn Res Methodology BACKGROUND: Disease prevalence is rarely explicitly considered in the early stages of the development of novel prognostic tests. Rather, researchers use the area under the receiver operating characteristic (AUROC) as the key metric to gauge and report predictive performance ability. Because this statistic does not account for disease prevalence, proposed tests may not appropriately address clinical requirements. This ultimately impedes the translation of prognostic tests into clinical practice. METHODS: A method to express positive- and/or negative predictive value criteria (PPV, NPV) within the ROC space is presented. Equations are derived for so-called equi-PPV (and equi-NPV) lines. Herewith it is possible, for any given prevalence, to plot a series of sensitivity-specificity pairs which meet a specified PPV (or NPV) criterion onto the ROC space. This concept is introduced by firstly reviewing the well-established “mechanics”, strengths and limitations of the ROC analysis in the context of developing prognostic models. Then, the use of PPV (and/or) NPV criteria to augment the ROC analysis is elaborated. Additionally, an interactive web tool was also created to enable people to explore the dynamics of lines of equi-predictive value in function of prevalence. The web tool also allows to gauge what ROC curve shapes best meet specific positive and/or negative predictive value criteria (http://d4ta.link/ppvnpv/). RESULTS: To illustrate the merits and implications of this concept, an example on the prediction of pre-eclampsia risk in low-risk nulliparous pregnancies is elaborated. CONCLUSIONS: In risk stratification, the clinical usefulness of a prognostic test can be expressed in positive- and negative predictive value criteria; the development of novel prognostic tests will be facilitated by the possibility to co-visualise such criteria together with ROC curves. To achieve clinically meaningful risk stratification, the development of separate tests to meet either a pre-specified positive value (rule-in) or a negative predictive value (rule-out) criteria should be considered: the characteristics of successful rule-in and rule-out tests may markedly differ. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s41512-017-0017-y) contains supplementary material, which is available to authorized users. BioMed Central 2017-11-15 /pmc/articles/PMC6460848/ /pubmed/31093546 http://dx.doi.org/10.1186/s41512-017-0017-y Text en © The Author(s) 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Methodology Thomas, Grégoire Kenny, Louise C. Baker, Philip N. Tuytten, Robin A novel method for interrogating receiver operating characteristic curves for assessing prognostic tests |
title | A novel method for interrogating receiver operating characteristic curves for assessing prognostic tests |
title_full | A novel method for interrogating receiver operating characteristic curves for assessing prognostic tests |
title_fullStr | A novel method for interrogating receiver operating characteristic curves for assessing prognostic tests |
title_full_unstemmed | A novel method for interrogating receiver operating characteristic curves for assessing prognostic tests |
title_short | A novel method for interrogating receiver operating characteristic curves for assessing prognostic tests |
title_sort | novel method for interrogating receiver operating characteristic curves for assessing prognostic tests |
topic | Methodology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6460848/ https://www.ncbi.nlm.nih.gov/pubmed/31093546 http://dx.doi.org/10.1186/s41512-017-0017-y |
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