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High density DNA data storage library via dehydration with digital microfluidic retrieval

DNA promises to be a high density data storage medium, but physical storage poses a challenge. To store large amounts of data, pools must be physically isolated so they can share the same addressing scheme. We propose the storage of dehydrated DNA spots on glass as an approach for scalable DNA data...

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Detalles Bibliográficos
Autores principales: Newman, Sharon, Stephenson, Ashley P., Willsey, Max, Nguyen, Bichlien H., Takahashi, Christopher N., Strauss, Karin, Ceze, Luis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6461645/
https://www.ncbi.nlm.nih.gov/pubmed/30979873
http://dx.doi.org/10.1038/s41467-019-09517-y
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author Newman, Sharon
Stephenson, Ashley P.
Willsey, Max
Nguyen, Bichlien H.
Takahashi, Christopher N.
Strauss, Karin
Ceze, Luis
author_facet Newman, Sharon
Stephenson, Ashley P.
Willsey, Max
Nguyen, Bichlien H.
Takahashi, Christopher N.
Strauss, Karin
Ceze, Luis
author_sort Newman, Sharon
collection PubMed
description DNA promises to be a high density data storage medium, but physical storage poses a challenge. To store large amounts of data, pools must be physically isolated so they can share the same addressing scheme. We propose the storage of dehydrated DNA spots on glass as an approach for scalable DNA data storage. The dried spots can then be retrieved by a water droplet using a digital microfluidic device. Here we show that this storage schema works with varying spot organization, spotted masses of DNA, and droplet retrieval dwell times. In all cases, the majority of the DNA was retrieved and successfully sequenced. We demonstrate that the spots can be densely arranged on a microfluidic device without significant contamination of the retrieval. We also demonstrate that 1 TB of data could be stored in a single spot of DNA and successfully retrieved using this method.
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spelling pubmed-64616452019-04-15 High density DNA data storage library via dehydration with digital microfluidic retrieval Newman, Sharon Stephenson, Ashley P. Willsey, Max Nguyen, Bichlien H. Takahashi, Christopher N. Strauss, Karin Ceze, Luis Nat Commun Article DNA promises to be a high density data storage medium, but physical storage poses a challenge. To store large amounts of data, pools must be physically isolated so they can share the same addressing scheme. We propose the storage of dehydrated DNA spots on glass as an approach for scalable DNA data storage. The dried spots can then be retrieved by a water droplet using a digital microfluidic device. Here we show that this storage schema works with varying spot organization, spotted masses of DNA, and droplet retrieval dwell times. In all cases, the majority of the DNA was retrieved and successfully sequenced. We demonstrate that the spots can be densely arranged on a microfluidic device without significant contamination of the retrieval. We also demonstrate that 1 TB of data could be stored in a single spot of DNA and successfully retrieved using this method. Nature Publishing Group UK 2019-04-12 /pmc/articles/PMC6461645/ /pubmed/30979873 http://dx.doi.org/10.1038/s41467-019-09517-y Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Newman, Sharon
Stephenson, Ashley P.
Willsey, Max
Nguyen, Bichlien H.
Takahashi, Christopher N.
Strauss, Karin
Ceze, Luis
High density DNA data storage library via dehydration with digital microfluidic retrieval
title High density DNA data storage library via dehydration with digital microfluidic retrieval
title_full High density DNA data storage library via dehydration with digital microfluidic retrieval
title_fullStr High density DNA data storage library via dehydration with digital microfluidic retrieval
title_full_unstemmed High density DNA data storage library via dehydration with digital microfluidic retrieval
title_short High density DNA data storage library via dehydration with digital microfluidic retrieval
title_sort high density dna data storage library via dehydration with digital microfluidic retrieval
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6461645/
https://www.ncbi.nlm.nih.gov/pubmed/30979873
http://dx.doi.org/10.1038/s41467-019-09517-y
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