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ETDB-Caltech: A blockchain-based distributed public database for electron tomography
Three-dimensional electron microscopy techniques like electron tomography provide valuable insights into cellular structures, and present significant challenges for data storage and dissemination. Here we explored a novel method to publicly release more than 11,000 such datasets, more than 30 TB in...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6464211/ https://www.ncbi.nlm.nih.gov/pubmed/30986271 http://dx.doi.org/10.1371/journal.pone.0215531 |
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author | Ortega, Davi R. Oikonomou, Catherine M. Ding, H. Jane Rees-Lee, Prudence Jensen, Grant J. |
author_facet | Ortega, Davi R. Oikonomou, Catherine M. Ding, H. Jane Rees-Lee, Prudence Jensen, Grant J. |
author_sort | Ortega, Davi R. |
collection | PubMed |
description | Three-dimensional electron microscopy techniques like electron tomography provide valuable insights into cellular structures, and present significant challenges for data storage and dissemination. Here we explored a novel method to publicly release more than 11,000 such datasets, more than 30 TB in total, collected by our group. Our method, based on a peer-to-peer file sharing network built around a blockchain ledger, offers a distributed solution to data storage. In addition, we offer a user-friendly browser-based interface, https://etdb.caltech.edu, for anyone interested to explore and download our data. We discuss the relative advantages and disadvantages of this system and provide tools for other groups to mine our data and/or use the same approach to share their own imaging datasets. |
format | Online Article Text |
id | pubmed-6464211 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-64642112019-05-03 ETDB-Caltech: A blockchain-based distributed public database for electron tomography Ortega, Davi R. Oikonomou, Catherine M. Ding, H. Jane Rees-Lee, Prudence Jensen, Grant J. PLoS One Research Article Three-dimensional electron microscopy techniques like electron tomography provide valuable insights into cellular structures, and present significant challenges for data storage and dissemination. Here we explored a novel method to publicly release more than 11,000 such datasets, more than 30 TB in total, collected by our group. Our method, based on a peer-to-peer file sharing network built around a blockchain ledger, offers a distributed solution to data storage. In addition, we offer a user-friendly browser-based interface, https://etdb.caltech.edu, for anyone interested to explore and download our data. We discuss the relative advantages and disadvantages of this system and provide tools for other groups to mine our data and/or use the same approach to share their own imaging datasets. Public Library of Science 2019-04-15 /pmc/articles/PMC6464211/ /pubmed/30986271 http://dx.doi.org/10.1371/journal.pone.0215531 Text en © 2019 Ortega et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Ortega, Davi R. Oikonomou, Catherine M. Ding, H. Jane Rees-Lee, Prudence Jensen, Grant J. ETDB-Caltech: A blockchain-based distributed public database for electron tomography |
title | ETDB-Caltech: A blockchain-based distributed public database for electron tomography |
title_full | ETDB-Caltech: A blockchain-based distributed public database for electron tomography |
title_fullStr | ETDB-Caltech: A blockchain-based distributed public database for electron tomography |
title_full_unstemmed | ETDB-Caltech: A blockchain-based distributed public database for electron tomography |
title_short | ETDB-Caltech: A blockchain-based distributed public database for electron tomography |
title_sort | etdb-caltech: a blockchain-based distributed public database for electron tomography |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6464211/ https://www.ncbi.nlm.nih.gov/pubmed/30986271 http://dx.doi.org/10.1371/journal.pone.0215531 |
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