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ETDB-Caltech: A blockchain-based distributed public database for electron tomography

Three-dimensional electron microscopy techniques like electron tomography provide valuable insights into cellular structures, and present significant challenges for data storage and dissemination. Here we explored a novel method to publicly release more than 11,000 such datasets, more than 30 TB in...

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Detalles Bibliográficos
Autores principales: Ortega, Davi R., Oikonomou, Catherine M., Ding, H. Jane, Rees-Lee, Prudence, Jensen, Grant J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6464211/
https://www.ncbi.nlm.nih.gov/pubmed/30986271
http://dx.doi.org/10.1371/journal.pone.0215531
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author Ortega, Davi R.
Oikonomou, Catherine M.
Ding, H. Jane
Rees-Lee, Prudence
Jensen, Grant J.
author_facet Ortega, Davi R.
Oikonomou, Catherine M.
Ding, H. Jane
Rees-Lee, Prudence
Jensen, Grant J.
author_sort Ortega, Davi R.
collection PubMed
description Three-dimensional electron microscopy techniques like electron tomography provide valuable insights into cellular structures, and present significant challenges for data storage and dissemination. Here we explored a novel method to publicly release more than 11,000 such datasets, more than 30 TB in total, collected by our group. Our method, based on a peer-to-peer file sharing network built around a blockchain ledger, offers a distributed solution to data storage. In addition, we offer a user-friendly browser-based interface, https://etdb.caltech.edu, for anyone interested to explore and download our data. We discuss the relative advantages and disadvantages of this system and provide tools for other groups to mine our data and/or use the same approach to share their own imaging datasets.
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spelling pubmed-64642112019-05-03 ETDB-Caltech: A blockchain-based distributed public database for electron tomography Ortega, Davi R. Oikonomou, Catherine M. Ding, H. Jane Rees-Lee, Prudence Jensen, Grant J. PLoS One Research Article Three-dimensional electron microscopy techniques like electron tomography provide valuable insights into cellular structures, and present significant challenges for data storage and dissemination. Here we explored a novel method to publicly release more than 11,000 such datasets, more than 30 TB in total, collected by our group. Our method, based on a peer-to-peer file sharing network built around a blockchain ledger, offers a distributed solution to data storage. In addition, we offer a user-friendly browser-based interface, https://etdb.caltech.edu, for anyone interested to explore and download our data. We discuss the relative advantages and disadvantages of this system and provide tools for other groups to mine our data and/or use the same approach to share their own imaging datasets. Public Library of Science 2019-04-15 /pmc/articles/PMC6464211/ /pubmed/30986271 http://dx.doi.org/10.1371/journal.pone.0215531 Text en © 2019 Ortega et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ortega, Davi R.
Oikonomou, Catherine M.
Ding, H. Jane
Rees-Lee, Prudence
Jensen, Grant J.
ETDB-Caltech: A blockchain-based distributed public database for electron tomography
title ETDB-Caltech: A blockchain-based distributed public database for electron tomography
title_full ETDB-Caltech: A blockchain-based distributed public database for electron tomography
title_fullStr ETDB-Caltech: A blockchain-based distributed public database for electron tomography
title_full_unstemmed ETDB-Caltech: A blockchain-based distributed public database for electron tomography
title_short ETDB-Caltech: A blockchain-based distributed public database for electron tomography
title_sort etdb-caltech: a blockchain-based distributed public database for electron tomography
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6464211/
https://www.ncbi.nlm.nih.gov/pubmed/30986271
http://dx.doi.org/10.1371/journal.pone.0215531
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