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The First Complete Genome Sequence of a Novel Tetrastichus brontispae RNA Virus-1 (TbRV-1)

The complete sequence of a novel RNA virus isolated from Tetrastichus brontispae (TbRV-1) was determined to be 12,239 nucleotides in length with five non-overlapping, linearly arranged coding sequences (CDS), potentially encoding nucleoproteins, hypothetical proteins, matrix proteins, glycoproteins,...

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Detalles Bibliográficos
Autores principales: Meng, E, Tang, Baozhen, Sanchez-Garcia, Francisco Javier, Qiao, Ting, Fu, Lang, Wang, Yu, Hou, You-Ming, Wu, Jiang-Lin, Chen, Zhi-Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6466307/
https://www.ncbi.nlm.nih.gov/pubmed/30871248
http://dx.doi.org/10.3390/v11030257
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author Meng, E
Tang, Baozhen
Sanchez-Garcia, Francisco Javier
Qiao, Ting
Fu, Lang
Wang, Yu
Hou, You-Ming
Wu, Jiang-Lin
Chen, Zhi-Ming
author_facet Meng, E
Tang, Baozhen
Sanchez-Garcia, Francisco Javier
Qiao, Ting
Fu, Lang
Wang, Yu
Hou, You-Ming
Wu, Jiang-Lin
Chen, Zhi-Ming
author_sort Meng, E
collection PubMed
description The complete sequence of a novel RNA virus isolated from Tetrastichus brontispae (TbRV-1) was determined to be 12,239 nucleotides in length with five non-overlapping, linearly arranged coding sequences (CDS), potentially encoding nucleoproteins, hypothetical proteins, matrix proteins, glycoproteins, and RNA-dependent RNA polymerases. Sequence analysis indicated that the RNA-dependent RNA polymerase of TbRV-1 shares a 65% nucleotide and 67% amino acid sequence identity with Hubei dimarhabdovirus 2, suggesting that TbRV-1 is a member of the dimarhabdovirus supergroup. This corresponded to the result of the phylogenetic analysis. The affiliation of TbRV-1 with members of the family Rhabdoviridae was further validated by similar transcription termination motifs (GGAACUUUUUUU) to the Drosophila sigmavirus. The prevalence of TbRV-1 in all tissues suggested that the virus was constitutive of, and not specific to, any wasp tissue. To our knowledge, this is the first report on the complete genome sequence of a dimarhabdovirus in parasitoids.
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spelling pubmed-64663072019-04-18 The First Complete Genome Sequence of a Novel Tetrastichus brontispae RNA Virus-1 (TbRV-1) Meng, E Tang, Baozhen Sanchez-Garcia, Francisco Javier Qiao, Ting Fu, Lang Wang, Yu Hou, You-Ming Wu, Jiang-Lin Chen, Zhi-Ming Viruses Article The complete sequence of a novel RNA virus isolated from Tetrastichus brontispae (TbRV-1) was determined to be 12,239 nucleotides in length with five non-overlapping, linearly arranged coding sequences (CDS), potentially encoding nucleoproteins, hypothetical proteins, matrix proteins, glycoproteins, and RNA-dependent RNA polymerases. Sequence analysis indicated that the RNA-dependent RNA polymerase of TbRV-1 shares a 65% nucleotide and 67% amino acid sequence identity with Hubei dimarhabdovirus 2, suggesting that TbRV-1 is a member of the dimarhabdovirus supergroup. This corresponded to the result of the phylogenetic analysis. The affiliation of TbRV-1 with members of the family Rhabdoviridae was further validated by similar transcription termination motifs (GGAACUUUUUUU) to the Drosophila sigmavirus. The prevalence of TbRV-1 in all tissues suggested that the virus was constitutive of, and not specific to, any wasp tissue. To our knowledge, this is the first report on the complete genome sequence of a dimarhabdovirus in parasitoids. MDPI 2019-03-13 /pmc/articles/PMC6466307/ /pubmed/30871248 http://dx.doi.org/10.3390/v11030257 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Meng, E
Tang, Baozhen
Sanchez-Garcia, Francisco Javier
Qiao, Ting
Fu, Lang
Wang, Yu
Hou, You-Ming
Wu, Jiang-Lin
Chen, Zhi-Ming
The First Complete Genome Sequence of a Novel Tetrastichus brontispae RNA Virus-1 (TbRV-1)
title The First Complete Genome Sequence of a Novel Tetrastichus brontispae RNA Virus-1 (TbRV-1)
title_full The First Complete Genome Sequence of a Novel Tetrastichus brontispae RNA Virus-1 (TbRV-1)
title_fullStr The First Complete Genome Sequence of a Novel Tetrastichus brontispae RNA Virus-1 (TbRV-1)
title_full_unstemmed The First Complete Genome Sequence of a Novel Tetrastichus brontispae RNA Virus-1 (TbRV-1)
title_short The First Complete Genome Sequence of a Novel Tetrastichus brontispae RNA Virus-1 (TbRV-1)
title_sort first complete genome sequence of a novel tetrastichus brontispae rna virus-1 (tbrv-1)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6466307/
https://www.ncbi.nlm.nih.gov/pubmed/30871248
http://dx.doi.org/10.3390/v11030257
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