Cargando…

Going beyond base-pairs: topology-based characterization of base-multiplets in RNA

Identification and characterization of base-multiplets, which are essentially mediated by base-pairing interactions, can provide insights into the diversity in the structure and dynamics of complex functional RNAs, and thus facilitate hypothesis driven biological research. The necessary nomenclature...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bhattacharya, Sohini, Jhunjhunwala, Ayush, Halder, Antarip, Bhattacharyya, Dhananjay, Mitra, Abhijit
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory Press 2019
Materias:	Bioinformatics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467009/ https://www.ncbi.nlm.nih.gov/pubmed/30792229 http://dx.doi.org/10.1261/rna.068551.118

Ejemplares similares

Estimating Strengths of Individual Hydrogen Bonds in RNA Base Pairs: Toward a Consensus between Different Computational Approaches
por: Halder, Antarip, et al.
Publicado: (2019)

RNABP COGEST: a resource for investigating functional RNAs
por: Bhattacharya, Sohini, et al.
Publicado: (2015)

Structural landscape of base pairs containing post-transcriptional modifications in RNA
por: Seelam, Preethi P., et al.
Publicado: (2017)

Evidence for Hidden Involvement of N3-Protonated Guanine in RNA Structure and Function
por: Halder, Antarip, et al.
Publicado: (2019)

Estimating the frequency of multiplets in single-cell RNA sequencing from cell-mixing experiments
por: Bloom, Jesse D.
Publicado: (2018)

Pairing interactions between nucleobases and ligands in aptamer:ligand complexes of riboswitches: crystal structure analysis, classification, optimal structures, and accurate interaction energies
por: Seelam, Preethi P., et al.
Publicado: (2019)

Wei2GO: weighted sequence similarity-based protein function prediction
por: Reijnders, Maarten J.M.F.
Publicado: (2022)

Direct identification of base-paired RNA nucleotides by correlated chemical probing
por: Krokhotin, Andrey, et al.
Publicado: (2017)

LoTo: a graphlet based method for the comparison of local topology between gene regulatory networks
por: Martin, Alberto J., et al.
Publicado: (2017)

Beyond gene ontology (GO): using biocuration approach to improve the gene nomenclature and functional annotation of rice S-domain kinase subfamily
por: Naithani, Sushma, et al.
Publicado: (2021)

Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures
por: Foroushani, Amir B.K., et al.
Publicado: (2013)

Characterization of bidirectional gene pairs in The Cancer Genome Atlas (TCGA) dataset
por: Tu, Juchuanli, et al.
Publicado: (2019)

iSnoDi-LSGT: identifying snoRNA-disease associations based on local similarity constraints and global topological constraints
por: Zhang, Wenxiang, et al.
Publicado: (2022)

Feature selection based on differentially correlated gene pairs reveals the mechanism of IFN-β therapy for multiple sclerosis
por: Jin, Tao, et al.
Publicado: (2020)

Study on the mechanism of Danshen-Guizhi drug pair in the treatment of ovarian cancer based on network pharmacology and in vitro experiment
por: Qin, Chongzhen, et al.
Publicado: (2022)

Review of hadron symmetries: multiplets, supermultiplets and infinite multiplets
por: Barut, A
Publicado: (1972)

PhyBin: binning trees by topology
por: Newton, Ryan R., et al.
Publicado: (2013)

Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum
por: Dahlhausen, Katherine E., et al.
Publicado: (2020)

Summary Visualizations of Gene Ontology Terms With GO-Figure!
por: Reijnders, Maarten J. M. F., et al.
Publicado: (2021)

Topological ultranodal pair states in iron-based superconductors
por: Setty, Chandan, et al.
Publicado: (2020)

Molecular subtypes, tumor microenvironment infiltration characterization and prognosis model based on cuproptosis in bladder cancer
por: Zhang, Heping, et al.
Publicado: (2023)

miRcorrNet: machine learning-based integration of miRNA and mRNA expression profiles, combined with feature grouping and ranking
por: Yousef, Malik, et al.
Publicado: (2021)

Supergauge multiplets and superfields
por: Ferrara, Sergio, et al.
Publicado: (1974)

An extended genovo metagenomic assembler by incorporating paired-end information
por: , Afiahayati, et al.
Publicado: (2013)

An ontology-based approach to the analysis of the acid-base state of patients at operative measures
por: Tianxing, Man, et al.
Publicado: (2021)

Genetic robustness of let-7 miRNA sequence–structure pairs
por: He, Qijun, et al.
Publicado: (2019)

Human adenovirus DNA polymerase is evolutionarily and functionally associated with human telomerase reverse transcriptase based on in silico molecular characterization that implicate abacavir and zidovudine
por: Fatoki, Toluwase Hezekiah
Publicado: (2023)

Inference and effects of barcode multiplets in droplet-based single-cell assays
por: Lareau, Caleb A., et al.
Publicado: (2020)

Pathways of topological rank analysis (PoTRA): a novel method to detect pathways involved in hepatocellular carcinoma
por: Li, Chaoxing, et al.
Publicado: (2018)

Automatic pulmonary artery-vein separation in CT images using a twin-pipe network and topology reconstruction
por: Pan, Lin, et al.
Publicado: (2023)

A glycolysis-related gene pairs signature predicts prognosis in patients with hepatocellular carcinoma
por: Zhou, Weige, et al.
Publicado: (2020)

Multi-omic characterization of the thermal stress phenome in the stony coral Montipora capitata
por: Williams, Amanda, et al.
Publicado: (2021)

Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal
por: Smith, Vincent, et al.
Publicado: (2013)

Moving beyond the desktop: prospects for practical bioimage analysis via the web
por: Ouyang, Wei, et al.
Publicado: (2023)

circBase: a database for circular RNAs
por: Glažar, Petar, et al.
Publicado: (2014)

BLAST-based validation of metagenomic sequence assignments
por: Bazinet, Adam L., et al.
Publicado: (2018)

HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences
por: Doğan, Tunca
Publicado: (2018)

NxRepair: error correction in de novo sequence assembly using Nextera mate pairs
por: Murphy, Rebecca R., et al.
Publicado: (2015)

Topology of RNA–protein nucleobase–amino acid π–π interactions and comparison to analogous DNA–protein π–π contacts
por: Wilson, Katie A., et al.
Publicado: (2016)

Long-range RNA structures in the human transcriptome beyond evolutionarily conserved regions
por: Margasyuk, Sergey, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_n6e2a1nihekuigcttv3n7vfveh