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High throughput measure of diversity in cytoplasmic and nuclear traits for unravelling geographic distribution of rosemary

In the present work, variability of both cytoplasmic and nuclear microsatellite traits was investigated with the aim of characterizing a set of rosemary germplasm resources (Salvia rosmarinus). Most of the materials were collected in Italy and France. High‐resolution melting curves were compared eac...

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Autores principales: Nunziata, Angelina, De Benedetti, Laura, Marchioni, Ilaria, Cervelli, Claudio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6468057/
https://www.ncbi.nlm.nih.gov/pubmed/31015962
http://dx.doi.org/10.1002/ece3.4998
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author Nunziata, Angelina
De Benedetti, Laura
Marchioni, Ilaria
Cervelli, Claudio
author_facet Nunziata, Angelina
De Benedetti, Laura
Marchioni, Ilaria
Cervelli, Claudio
author_sort Nunziata, Angelina
collection PubMed
description In the present work, variability of both cytoplasmic and nuclear microsatellite traits was investigated with the aim of characterizing a set of rosemary germplasm resources (Salvia rosmarinus). Most of the materials were collected in Italy and France. High‐resolution melting curves were compared each other computing their Euclidean distances and estimating the differences within their principal component as a measure of genetic diversity. Mantel correlation results combined to linear discriminant analysis allowed examined populations to be divided in four principal groups corresponding to four geographic areas, with few interesting and discussed exceptions. As rosemary propagates by seeds coming from insect mediated pollination, steady wild populations can be expected to be in panmictic equilibrium. Gained results confirmed and extended precedent characterization of rosemary genotypes and are compatible with the distribution of other Mediterranean species, as well as with the presence of a glacial refugium in the north‐east area of Sardinia previously described. As the officinal use of this aromatic shrub is spreading, characterization and conservation of wild Mediterranean germplasm is gaining strategic importance. A core collection of 100 genotypes was pointed out as suitable for a cheaper biodiversity ex situ preservation as well as for subsequent metabolic and linkage disequilibrium analyses.
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spelling pubmed-64680572019-04-23 High throughput measure of diversity in cytoplasmic and nuclear traits for unravelling geographic distribution of rosemary Nunziata, Angelina De Benedetti, Laura Marchioni, Ilaria Cervelli, Claudio Ecol Evol Original Research In the present work, variability of both cytoplasmic and nuclear microsatellite traits was investigated with the aim of characterizing a set of rosemary germplasm resources (Salvia rosmarinus). Most of the materials were collected in Italy and France. High‐resolution melting curves were compared each other computing their Euclidean distances and estimating the differences within their principal component as a measure of genetic diversity. Mantel correlation results combined to linear discriminant analysis allowed examined populations to be divided in four principal groups corresponding to four geographic areas, with few interesting and discussed exceptions. As rosemary propagates by seeds coming from insect mediated pollination, steady wild populations can be expected to be in panmictic equilibrium. Gained results confirmed and extended precedent characterization of rosemary genotypes and are compatible with the distribution of other Mediterranean species, as well as with the presence of a glacial refugium in the north‐east area of Sardinia previously described. As the officinal use of this aromatic shrub is spreading, characterization and conservation of wild Mediterranean germplasm is gaining strategic importance. A core collection of 100 genotypes was pointed out as suitable for a cheaper biodiversity ex situ preservation as well as for subsequent metabolic and linkage disequilibrium analyses. John Wiley and Sons Inc. 2019-03-18 /pmc/articles/PMC6468057/ /pubmed/31015962 http://dx.doi.org/10.1002/ece3.4998 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Nunziata, Angelina
De Benedetti, Laura
Marchioni, Ilaria
Cervelli, Claudio
High throughput measure of diversity in cytoplasmic and nuclear traits for unravelling geographic distribution of rosemary
title High throughput measure of diversity in cytoplasmic and nuclear traits for unravelling geographic distribution of rosemary
title_full High throughput measure of diversity in cytoplasmic and nuclear traits for unravelling geographic distribution of rosemary
title_fullStr High throughput measure of diversity in cytoplasmic and nuclear traits for unravelling geographic distribution of rosemary
title_full_unstemmed High throughput measure of diversity in cytoplasmic and nuclear traits for unravelling geographic distribution of rosemary
title_short High throughput measure of diversity in cytoplasmic and nuclear traits for unravelling geographic distribution of rosemary
title_sort high throughput measure of diversity in cytoplasmic and nuclear traits for unravelling geographic distribution of rosemary
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6468057/
https://www.ncbi.nlm.nih.gov/pubmed/31015962
http://dx.doi.org/10.1002/ece3.4998
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