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Predicting Pulmonary Function Testing from Quantified Computed Tomography Using Machine Learning Algorithms in Patients with COPD

Introduction: Quantitative computed tomography (qCT) is an emergent technique for diagnostics and research in patients with chronic obstructive pulmonary disease (COPD). qCT parameters demonstrate a correlation with pulmonary function tests and symptoms. However, qCT only provides anatomical, not fu...

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Autores principales: Gawlitza, Joshua, Sturm, Timo, Spohrer, Kai, Henzler, Thomas, Akin, Ibrahim, Schönberg, Stefan, Borggrefe, Martin, Haubenreisser, Holger, Trinkmann, Frederik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6468377/
https://www.ncbi.nlm.nih.gov/pubmed/30901865
http://dx.doi.org/10.3390/diagnostics9010033
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author Gawlitza, Joshua
Sturm, Timo
Spohrer, Kai
Henzler, Thomas
Akin, Ibrahim
Schönberg, Stefan
Borggrefe, Martin
Haubenreisser, Holger
Trinkmann, Frederik
author_facet Gawlitza, Joshua
Sturm, Timo
Spohrer, Kai
Henzler, Thomas
Akin, Ibrahim
Schönberg, Stefan
Borggrefe, Martin
Haubenreisser, Holger
Trinkmann, Frederik
author_sort Gawlitza, Joshua
collection PubMed
description Introduction: Quantitative computed tomography (qCT) is an emergent technique for diagnostics and research in patients with chronic obstructive pulmonary disease (COPD). qCT parameters demonstrate a correlation with pulmonary function tests and symptoms. However, qCT only provides anatomical, not functional, information. We evaluated five distinct, partial-machine learning-based mathematical models to predict lung function parameters from qCT values in comparison with pulmonary function tests. Methods: 75 patients with diagnosed COPD underwent body plethysmography and a dose-optimized qCT examination on a third-generation, dual-source CT with inspiration and expiration. Delta values (inspiration—expiration) were calculated afterwards. Four parameters were quantified: mean lung density, lung volume low-attenuated volume, and full width at half maximum. Five models were evaluated for best prediction: average prediction, median prediction, k-nearest neighbours (kNN), gradient boosting, and multilayer perceptron. Results: The lowest mean relative error (MRE) was calculated for the kNN model with 16%. Similar low MREs were found for polynomial regression as well as gradient boosting-based prediction. Other models led to higher MREs and thereby worse predictive performance. Beyond the sole MRE, distinct differences in prediction performance, dependent on the initial dataset (expiration, inspiration, delta), were found. Conclusion: Different, partially machine learning-based models allow the prediction of lung function values from static qCT parameters within a reasonable margin of error. Therefore, qCT parameters may contain more information than we currently utilize and can potentially augment standard functional lung testing.
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spelling pubmed-64683772019-04-19 Predicting Pulmonary Function Testing from Quantified Computed Tomography Using Machine Learning Algorithms in Patients with COPD Gawlitza, Joshua Sturm, Timo Spohrer, Kai Henzler, Thomas Akin, Ibrahim Schönberg, Stefan Borggrefe, Martin Haubenreisser, Holger Trinkmann, Frederik Diagnostics (Basel) Article Introduction: Quantitative computed tomography (qCT) is an emergent technique for diagnostics and research in patients with chronic obstructive pulmonary disease (COPD). qCT parameters demonstrate a correlation with pulmonary function tests and symptoms. However, qCT only provides anatomical, not functional, information. We evaluated five distinct, partial-machine learning-based mathematical models to predict lung function parameters from qCT values in comparison with pulmonary function tests. Methods: 75 patients with diagnosed COPD underwent body plethysmography and a dose-optimized qCT examination on a third-generation, dual-source CT with inspiration and expiration. Delta values (inspiration—expiration) were calculated afterwards. Four parameters were quantified: mean lung density, lung volume low-attenuated volume, and full width at half maximum. Five models were evaluated for best prediction: average prediction, median prediction, k-nearest neighbours (kNN), gradient boosting, and multilayer perceptron. Results: The lowest mean relative error (MRE) was calculated for the kNN model with 16%. Similar low MREs were found for polynomial regression as well as gradient boosting-based prediction. Other models led to higher MREs and thereby worse predictive performance. Beyond the sole MRE, distinct differences in prediction performance, dependent on the initial dataset (expiration, inspiration, delta), were found. Conclusion: Different, partially machine learning-based models allow the prediction of lung function values from static qCT parameters within a reasonable margin of error. Therefore, qCT parameters may contain more information than we currently utilize and can potentially augment standard functional lung testing. MDPI 2019-03-21 /pmc/articles/PMC6468377/ /pubmed/30901865 http://dx.doi.org/10.3390/diagnostics9010033 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Gawlitza, Joshua
Sturm, Timo
Spohrer, Kai
Henzler, Thomas
Akin, Ibrahim
Schönberg, Stefan
Borggrefe, Martin
Haubenreisser, Holger
Trinkmann, Frederik
Predicting Pulmonary Function Testing from Quantified Computed Tomography Using Machine Learning Algorithms in Patients with COPD
title Predicting Pulmonary Function Testing from Quantified Computed Tomography Using Machine Learning Algorithms in Patients with COPD
title_full Predicting Pulmonary Function Testing from Quantified Computed Tomography Using Machine Learning Algorithms in Patients with COPD
title_fullStr Predicting Pulmonary Function Testing from Quantified Computed Tomography Using Machine Learning Algorithms in Patients with COPD
title_full_unstemmed Predicting Pulmonary Function Testing from Quantified Computed Tomography Using Machine Learning Algorithms in Patients with COPD
title_short Predicting Pulmonary Function Testing from Quantified Computed Tomography Using Machine Learning Algorithms in Patients with COPD
title_sort predicting pulmonary function testing from quantified computed tomography using machine learning algorithms in patients with copd
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6468377/
https://www.ncbi.nlm.nih.gov/pubmed/30901865
http://dx.doi.org/10.3390/diagnostics9010033
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