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CRISPR/Cas precision: do we need to worry about off-targeting in plants?

The CRISPR/Cas technology has recently become the tool of choice for targeted genome modification in plants and beyond. Although CRSIPR/Cas offers a rapid and facile way of introducing changes at genomic loci of interest, its application is associated with off-targeting, i.e. introduction of uninten...

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Detalles Bibliográficos
Autores principales: Hahn, Florian, Nekrasov, Vladimir
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6469637/
https://www.ncbi.nlm.nih.gov/pubmed/30426198
http://dx.doi.org/10.1007/s00299-018-2355-9
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author Hahn, Florian
Nekrasov, Vladimir
author_facet Hahn, Florian
Nekrasov, Vladimir
author_sort Hahn, Florian
collection PubMed
description The CRISPR/Cas technology has recently become the tool of choice for targeted genome modification in plants and beyond. Although CRSIPR/Cas offers a rapid and facile way of introducing changes at genomic loci of interest, its application is associated with off-targeting, i.e. introduction of unintended mutations at off-target sites within the genome, which has been reported frequently in the mammalian field. Here we summarise the current knowledge on the precision of CRISPR/Cas in plant systems and provide a summary of state-of the-art strategies for avoiding off-target mutations, as well as unintended on-target changes, in plants. These include using natural (e.g. Cas12a) or engineered (e.g. SpCas9-HF) CRISPR/Cas nucleases characterised by higher precision, as compared to the commonly used wild type SpCas9. In addition, we discuss the usage of CRISPR/Cas nucleases in the form of ribonucleoproteins (RNPs) as an option for reducing off-targeting in plants. Finally, we conclude that the most important factor for reducing CRISPR/Cas off-targeting remains careful selection of target sequences, for which we provide an overview of available online software tools and experimental guidance.
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spelling pubmed-64696372019-05-03 CRISPR/Cas precision: do we need to worry about off-targeting in plants? Hahn, Florian Nekrasov, Vladimir Plant Cell Rep Opinion Paper The CRISPR/Cas technology has recently become the tool of choice for targeted genome modification in plants and beyond. Although CRSIPR/Cas offers a rapid and facile way of introducing changes at genomic loci of interest, its application is associated with off-targeting, i.e. introduction of unintended mutations at off-target sites within the genome, which has been reported frequently in the mammalian field. Here we summarise the current knowledge on the precision of CRISPR/Cas in plant systems and provide a summary of state-of the-art strategies for avoiding off-target mutations, as well as unintended on-target changes, in plants. These include using natural (e.g. Cas12a) or engineered (e.g. SpCas9-HF) CRISPR/Cas nucleases characterised by higher precision, as compared to the commonly used wild type SpCas9. In addition, we discuss the usage of CRISPR/Cas nucleases in the form of ribonucleoproteins (RNPs) as an option for reducing off-targeting in plants. Finally, we conclude that the most important factor for reducing CRISPR/Cas off-targeting remains careful selection of target sequences, for which we provide an overview of available online software tools and experimental guidance. Springer Berlin Heidelberg 2018-11-13 2019 /pmc/articles/PMC6469637/ /pubmed/30426198 http://dx.doi.org/10.1007/s00299-018-2355-9 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Opinion Paper
Hahn, Florian
Nekrasov, Vladimir
CRISPR/Cas precision: do we need to worry about off-targeting in plants?
title CRISPR/Cas precision: do we need to worry about off-targeting in plants?
title_full CRISPR/Cas precision: do we need to worry about off-targeting in plants?
title_fullStr CRISPR/Cas precision: do we need to worry about off-targeting in plants?
title_full_unstemmed CRISPR/Cas precision: do we need to worry about off-targeting in plants?
title_short CRISPR/Cas precision: do we need to worry about off-targeting in plants?
title_sort crispr/cas precision: do we need to worry about off-targeting in plants?
topic Opinion Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6469637/
https://www.ncbi.nlm.nih.gov/pubmed/30426198
http://dx.doi.org/10.1007/s00299-018-2355-9
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