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Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines

The neuroimaging community is steering towards increasingly large sample sizes, which are highly heterogeneous because they can only be acquired by multi-site consortia. The visual assessment of every imaging scan is a necessary quality control step, yet arduous and time-consuming. A sizeable body o...

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Autores principales: Esteban, Oscar, Blair, Ross W., Nielson, Dylan M., Varada, Jan C., Marrett, Sean, Thomas, Adam G., Poldrack, Russell A., Gorgolewski, Krzysztof J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6472378/
https://www.ncbi.nlm.nih.gov/pubmed/30975998
http://dx.doi.org/10.1038/s41597-019-0035-4
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author Esteban, Oscar
Blair, Ross W.
Nielson, Dylan M.
Varada, Jan C.
Marrett, Sean
Thomas, Adam G.
Poldrack, Russell A.
Gorgolewski, Krzysztof J.
author_facet Esteban, Oscar
Blair, Ross W.
Nielson, Dylan M.
Varada, Jan C.
Marrett, Sean
Thomas, Adam G.
Poldrack, Russell A.
Gorgolewski, Krzysztof J.
author_sort Esteban, Oscar
collection PubMed
description The neuroimaging community is steering towards increasingly large sample sizes, which are highly heterogeneous because they can only be acquired by multi-site consortia. The visual assessment of every imaging scan is a necessary quality control step, yet arduous and time-consuming. A sizeable body of evidence shows that images of low quality are a source of variability that may be comparable to the effect size under study. We present the MRIQC Web-API, an open crowdsourced database that collects image quality metrics extracted from MR images and corresponding manual assessments by experts. The database is rapidly growing, and currently contains over 100,000 records of image quality metrics of functional and anatomical MRIs of the human brain, and over 200 expert ratings. The resource is designed for researchers to share image quality metrics and annotations that can readily be reused in training human experts and machine learning algorithms. The ultimate goal of the database is to allow the development of fully automated quality control tools that outperform expert ratings in identifying subpar images.
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spelling pubmed-64723782019-04-19 Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines Esteban, Oscar Blair, Ross W. Nielson, Dylan M. Varada, Jan C. Marrett, Sean Thomas, Adam G. Poldrack, Russell A. Gorgolewski, Krzysztof J. Sci Data Data Descriptor The neuroimaging community is steering towards increasingly large sample sizes, which are highly heterogeneous because they can only be acquired by multi-site consortia. The visual assessment of every imaging scan is a necessary quality control step, yet arduous and time-consuming. A sizeable body of evidence shows that images of low quality are a source of variability that may be comparable to the effect size under study. We present the MRIQC Web-API, an open crowdsourced database that collects image quality metrics extracted from MR images and corresponding manual assessments by experts. The database is rapidly growing, and currently contains over 100,000 records of image quality metrics of functional and anatomical MRIs of the human brain, and over 200 expert ratings. The resource is designed for researchers to share image quality metrics and annotations that can readily be reused in training human experts and machine learning algorithms. The ultimate goal of the database is to allow the development of fully automated quality control tools that outperform expert ratings in identifying subpar images. Nature Publishing Group UK 2019-04-11 /pmc/articles/PMC6472378/ /pubmed/30975998 http://dx.doi.org/10.1038/s41597-019-0035-4 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Esteban, Oscar
Blair, Ross W.
Nielson, Dylan M.
Varada, Jan C.
Marrett, Sean
Thomas, Adam G.
Poldrack, Russell A.
Gorgolewski, Krzysztof J.
Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines
title Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines
title_full Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines
title_fullStr Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines
title_full_unstemmed Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines
title_short Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines
title_sort crowdsourced mri quality metrics and expert quality annotations for training of humans and machines
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6472378/
https://www.ncbi.nlm.nih.gov/pubmed/30975998
http://dx.doi.org/10.1038/s41597-019-0035-4
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