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Multi-trait multi-environment models in the genetic selection of segregating soybean progeny

At present, single-trait best linear unbiased prediction (BLUP) is the standard method for genetic selection in soybean. However, when genetic selection is performed based on two or more genetically correlated traits and these are analyzed individually, selection bias may arise. Under these conditio...

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Autores principales: Volpato, Leonardo, Alves, Rodrigo Silva, Teodoro, Paulo Eduardo, Vilela de Resende, Marcos Deon, Nascimento, Moysés, Nascimento, Ana Carolina Campana, Ludke, Willian Hytalo, Lopes da Silva, Felipe, Borém, Aluízio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6472761/
https://www.ncbi.nlm.nih.gov/pubmed/30998705
http://dx.doi.org/10.1371/journal.pone.0215315
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author Volpato, Leonardo
Alves, Rodrigo Silva
Teodoro, Paulo Eduardo
Vilela de Resende, Marcos Deon
Nascimento, Moysés
Nascimento, Ana Carolina Campana
Ludke, Willian Hytalo
Lopes da Silva, Felipe
Borém, Aluízio
author_facet Volpato, Leonardo
Alves, Rodrigo Silva
Teodoro, Paulo Eduardo
Vilela de Resende, Marcos Deon
Nascimento, Moysés
Nascimento, Ana Carolina Campana
Ludke, Willian Hytalo
Lopes da Silva, Felipe
Borém, Aluízio
author_sort Volpato, Leonardo
collection PubMed
description At present, single-trait best linear unbiased prediction (BLUP) is the standard method for genetic selection in soybean. However, when genetic selection is performed based on two or more genetically correlated traits and these are analyzed individually, selection bias may arise. Under these conditions, considering the correlation structure between the evaluated traits may provide more-accurate genetic estimates for the evaluated parameters, even under environmental influences. The present study was thus developed to examine the efficiency and applicability of multi-trait multi-environment (MTME) models by the residual maximum likelihood (REML/BLUP) and Bayesian approaches in the genetic selection of segregating soybean progeny. The study involved data pertaining to 203 soybean F(2:4) progeny assessed in two environments for the following traits: number of days to maturity (DM), 100-seed weight (SW), and average seed yield per plot (SY). Variance components and genetic and non-genetic parameters were estimated via the REML/BLUP and Bayesian methods. The variance components estimated and the breeding values and genetic gains predicted with selection through the Bayesian procedure were similar to those obtained by REML/BLUP. The frequentist and Bayesian MTME models provided higher estimates of broad-sense heritability per plot (or heritability of total effects of progeny; [Image: see text] ) and mean accuracy of progeny than their respective single-trait versions. Bayesian analysis provided the credibility intervals for the estimates of [Image: see text] . Therefore, MTME led to greater predicted gains from selection. On this basis, this procedure can be efficiently applied in the genetic selection of segregating soybean progeny.
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spelling pubmed-64727612019-05-03 Multi-trait multi-environment models in the genetic selection of segregating soybean progeny Volpato, Leonardo Alves, Rodrigo Silva Teodoro, Paulo Eduardo Vilela de Resende, Marcos Deon Nascimento, Moysés Nascimento, Ana Carolina Campana Ludke, Willian Hytalo Lopes da Silva, Felipe Borém, Aluízio PLoS One Research Article At present, single-trait best linear unbiased prediction (BLUP) is the standard method for genetic selection in soybean. However, when genetic selection is performed based on two or more genetically correlated traits and these are analyzed individually, selection bias may arise. Under these conditions, considering the correlation structure between the evaluated traits may provide more-accurate genetic estimates for the evaluated parameters, even under environmental influences. The present study was thus developed to examine the efficiency and applicability of multi-trait multi-environment (MTME) models by the residual maximum likelihood (REML/BLUP) and Bayesian approaches in the genetic selection of segregating soybean progeny. The study involved data pertaining to 203 soybean F(2:4) progeny assessed in two environments for the following traits: number of days to maturity (DM), 100-seed weight (SW), and average seed yield per plot (SY). Variance components and genetic and non-genetic parameters were estimated via the REML/BLUP and Bayesian methods. The variance components estimated and the breeding values and genetic gains predicted with selection through the Bayesian procedure were similar to those obtained by REML/BLUP. The frequentist and Bayesian MTME models provided higher estimates of broad-sense heritability per plot (or heritability of total effects of progeny; [Image: see text] ) and mean accuracy of progeny than their respective single-trait versions. Bayesian analysis provided the credibility intervals for the estimates of [Image: see text] . Therefore, MTME led to greater predicted gains from selection. On this basis, this procedure can be efficiently applied in the genetic selection of segregating soybean progeny. Public Library of Science 2019-04-18 /pmc/articles/PMC6472761/ /pubmed/30998705 http://dx.doi.org/10.1371/journal.pone.0215315 Text en © 2019 Volpato et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Volpato, Leonardo
Alves, Rodrigo Silva
Teodoro, Paulo Eduardo
Vilela de Resende, Marcos Deon
Nascimento, Moysés
Nascimento, Ana Carolina Campana
Ludke, Willian Hytalo
Lopes da Silva, Felipe
Borém, Aluízio
Multi-trait multi-environment models in the genetic selection of segregating soybean progeny
title Multi-trait multi-environment models in the genetic selection of segregating soybean progeny
title_full Multi-trait multi-environment models in the genetic selection of segregating soybean progeny
title_fullStr Multi-trait multi-environment models in the genetic selection of segregating soybean progeny
title_full_unstemmed Multi-trait multi-environment models in the genetic selection of segregating soybean progeny
title_short Multi-trait multi-environment models in the genetic selection of segregating soybean progeny
title_sort multi-trait multi-environment models in the genetic selection of segregating soybean progeny
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6472761/
https://www.ncbi.nlm.nih.gov/pubmed/30998705
http://dx.doi.org/10.1371/journal.pone.0215315
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