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Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds

BACKGROUND: The tea plant is a crucial economic crop. The floral organ development consumes a large amount of nutrients, which affects the leaf yield. To understand the mechanism by which the tea plant produces sterile floral buds, we obtained a sterile tea plant by artificial hybridization. RNA-seq...

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Autores principales: Chen, Linbo, Qu, Hao, Xia, Lifei, Liu, Yue, Jiang, Huibing, Sun, Yunnan, Liang, Mingzhi, Jiang, Changjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6474060/
https://www.ncbi.nlm.nih.gov/pubmed/31019434
http://dx.doi.org/10.1186/s41065-019-0090-z
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author Chen, Linbo
Qu, Hao
Xia, Lifei
Liu, Yue
Jiang, Huibing
Sun, Yunnan
Liang, Mingzhi
Jiang, Changjun
author_facet Chen, Linbo
Qu, Hao
Xia, Lifei
Liu, Yue
Jiang, Huibing
Sun, Yunnan
Liang, Mingzhi
Jiang, Changjun
author_sort Chen, Linbo
collection PubMed
description BACKGROUND: The tea plant is a crucial economic crop. The floral organ development consumes a large amount of nutrients, which affects the leaf yield. To understand the mechanism by which the tea plant produces sterile floral buds, we obtained a sterile tea plant by artificial hybridization. RNA-sequencing based transcriptome analysis was implemented in three samples to determine the differentially expressed genes (DEGs) related to flower development. RESULTS: In this study, a total of 1991 DEGs were identified; 1057 genes were up-regulated and 934 genes were down-regulated in sterile hybrid floral buds. These were mainly distributed in the regulation of biological and metabolic processes. Significantly, auxin biosynthesis genes YUCCA, AUX1 and PIN were dramatically down-regulated, and ARF gene was up-regulated in the sterile hybrid floral buds, and flower development-related genes AP1, AP2 and SPL were changed. A total of 12 energy transfer-related genes were significantly decreased. Furthermore, the expression of 11 transcription factor genes was significantly different. CONCLUSION: The transcriptome analysis suggested that the production of sterile floral buds is a complex bioprocess, and that low auxin-related gene levels result in the formation of sterile floral buds in the tea plant.
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spelling pubmed-64740602019-04-24 Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds Chen, Linbo Qu, Hao Xia, Lifei Liu, Yue Jiang, Huibing Sun, Yunnan Liang, Mingzhi Jiang, Changjun Hereditas Research BACKGROUND: The tea plant is a crucial economic crop. The floral organ development consumes a large amount of nutrients, which affects the leaf yield. To understand the mechanism by which the tea plant produces sterile floral buds, we obtained a sterile tea plant by artificial hybridization. RNA-sequencing based transcriptome analysis was implemented in three samples to determine the differentially expressed genes (DEGs) related to flower development. RESULTS: In this study, a total of 1991 DEGs were identified; 1057 genes were up-regulated and 934 genes were down-regulated in sterile hybrid floral buds. These were mainly distributed in the regulation of biological and metabolic processes. Significantly, auxin biosynthesis genes YUCCA, AUX1 and PIN were dramatically down-regulated, and ARF gene was up-regulated in the sterile hybrid floral buds, and flower development-related genes AP1, AP2 and SPL were changed. A total of 12 energy transfer-related genes were significantly decreased. Furthermore, the expression of 11 transcription factor genes was significantly different. CONCLUSION: The transcriptome analysis suggested that the production of sterile floral buds is a complex bioprocess, and that low auxin-related gene levels result in the formation of sterile floral buds in the tea plant. BioMed Central 2019-04-18 /pmc/articles/PMC6474060/ /pubmed/31019434 http://dx.doi.org/10.1186/s41065-019-0090-z Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Chen, Linbo
Qu, Hao
Xia, Lifei
Liu, Yue
Jiang, Huibing
Sun, Yunnan
Liang, Mingzhi
Jiang, Changjun
Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds
title Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds
title_full Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds
title_fullStr Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds
title_full_unstemmed Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds
title_short Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds
title_sort transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6474060/
https://www.ncbi.nlm.nih.gov/pubmed/31019434
http://dx.doi.org/10.1186/s41065-019-0090-z
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