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Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds
BACKGROUND: The tea plant is a crucial economic crop. The floral organ development consumes a large amount of nutrients, which affects the leaf yield. To understand the mechanism by which the tea plant produces sterile floral buds, we obtained a sterile tea plant by artificial hybridization. RNA-seq...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6474060/ https://www.ncbi.nlm.nih.gov/pubmed/31019434 http://dx.doi.org/10.1186/s41065-019-0090-z |
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author | Chen, Linbo Qu, Hao Xia, Lifei Liu, Yue Jiang, Huibing Sun, Yunnan Liang, Mingzhi Jiang, Changjun |
author_facet | Chen, Linbo Qu, Hao Xia, Lifei Liu, Yue Jiang, Huibing Sun, Yunnan Liang, Mingzhi Jiang, Changjun |
author_sort | Chen, Linbo |
collection | PubMed |
description | BACKGROUND: The tea plant is a crucial economic crop. The floral organ development consumes a large amount of nutrients, which affects the leaf yield. To understand the mechanism by which the tea plant produces sterile floral buds, we obtained a sterile tea plant by artificial hybridization. RNA-sequencing based transcriptome analysis was implemented in three samples to determine the differentially expressed genes (DEGs) related to flower development. RESULTS: In this study, a total of 1991 DEGs were identified; 1057 genes were up-regulated and 934 genes were down-regulated in sterile hybrid floral buds. These were mainly distributed in the regulation of biological and metabolic processes. Significantly, auxin biosynthesis genes YUCCA, AUX1 and PIN were dramatically down-regulated, and ARF gene was up-regulated in the sterile hybrid floral buds, and flower development-related genes AP1, AP2 and SPL were changed. A total of 12 energy transfer-related genes were significantly decreased. Furthermore, the expression of 11 transcription factor genes was significantly different. CONCLUSION: The transcriptome analysis suggested that the production of sterile floral buds is a complex bioprocess, and that low auxin-related gene levels result in the formation of sterile floral buds in the tea plant. |
format | Online Article Text |
id | pubmed-6474060 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-64740602019-04-24 Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds Chen, Linbo Qu, Hao Xia, Lifei Liu, Yue Jiang, Huibing Sun, Yunnan Liang, Mingzhi Jiang, Changjun Hereditas Research BACKGROUND: The tea plant is a crucial economic crop. The floral organ development consumes a large amount of nutrients, which affects the leaf yield. To understand the mechanism by which the tea plant produces sterile floral buds, we obtained a sterile tea plant by artificial hybridization. RNA-sequencing based transcriptome analysis was implemented in three samples to determine the differentially expressed genes (DEGs) related to flower development. RESULTS: In this study, a total of 1991 DEGs were identified; 1057 genes were up-regulated and 934 genes were down-regulated in sterile hybrid floral buds. These were mainly distributed in the regulation of biological and metabolic processes. Significantly, auxin biosynthesis genes YUCCA, AUX1 and PIN were dramatically down-regulated, and ARF gene was up-regulated in the sterile hybrid floral buds, and flower development-related genes AP1, AP2 and SPL were changed. A total of 12 energy transfer-related genes were significantly decreased. Furthermore, the expression of 11 transcription factor genes was significantly different. CONCLUSION: The transcriptome analysis suggested that the production of sterile floral buds is a complex bioprocess, and that low auxin-related gene levels result in the formation of sterile floral buds in the tea plant. BioMed Central 2019-04-18 /pmc/articles/PMC6474060/ /pubmed/31019434 http://dx.doi.org/10.1186/s41065-019-0090-z Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Chen, Linbo Qu, Hao Xia, Lifei Liu, Yue Jiang, Huibing Sun, Yunnan Liang, Mingzhi Jiang, Changjun Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds |
title | Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds |
title_full | Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds |
title_fullStr | Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds |
title_full_unstemmed | Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds |
title_short | Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds |
title_sort | transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6474060/ https://www.ncbi.nlm.nih.gov/pubmed/31019434 http://dx.doi.org/10.1186/s41065-019-0090-z |
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