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Utilizing herbarium specimens to quantify historical mycorrhizal communities

PREMISE OF THE STUDY: Mycorrhiza are critical to ecosystem functioning, but a lack of historical baseline data limits our understanding of the long‐term belowground effects of global change. Herbarium specimens may provide this needed insight. However, it is unknown whether DNA of arbuscular mycorrh...

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Autores principales: Heberling, J. Mason, Burke, David J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6476165/
https://www.ncbi.nlm.nih.gov/pubmed/31024779
http://dx.doi.org/10.1002/aps3.1223
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author Heberling, J. Mason
Burke, David J.
author_facet Heberling, J. Mason
Burke, David J.
author_sort Heberling, J. Mason
collection PubMed
description PREMISE OF THE STUDY: Mycorrhiza are critical to ecosystem functioning, but a lack of historical baseline data limits our understanding of the long‐term belowground effects of global change. Herbarium specimens may provide this needed insight. However, it is unknown whether DNA of arbuscular mycorrhizal fungi (AMF) can be reliably extracted from vascular plant specimen roots. METHODS: We sampled roots from herbarium specimens of four herbaceous forest species collected in western Pennsylvania between 1881–2008. Using molecular methods (terminal restriction fragment length polymorphism and sequence analysis), we quantified AMF communities from specimen roots and tested for contamination. RESULTS: We successfully amplified AMF DNA from 44% (21/48) of the root but not leaf samples, indicating specimen contamination was negligible. As expected, there were significant differences in AMF composition between plant species (P < 0.05). However, no differences in AMF communities were detected through time, possibly due to limited sample size and low amplification rates in recent collections. DISCUSSION: Herbaria have potential as sources of valuable belowground microbial data to answer questions across geographic, temporal, and taxonomic scales otherwise not feasible. Ongoing methodological developments will only magnify this potential. Further tests are needed to determine curatorial practices that maximize this innovative use of herbarium specimens.
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spelling pubmed-64761652019-04-25 Utilizing herbarium specimens to quantify historical mycorrhizal communities Heberling, J. Mason Burke, David J. Appl Plant Sci Application Articles PREMISE OF THE STUDY: Mycorrhiza are critical to ecosystem functioning, but a lack of historical baseline data limits our understanding of the long‐term belowground effects of global change. Herbarium specimens may provide this needed insight. However, it is unknown whether DNA of arbuscular mycorrhizal fungi (AMF) can be reliably extracted from vascular plant specimen roots. METHODS: We sampled roots from herbarium specimens of four herbaceous forest species collected in western Pennsylvania between 1881–2008. Using molecular methods (terminal restriction fragment length polymorphism and sequence analysis), we quantified AMF communities from specimen roots and tested for contamination. RESULTS: We successfully amplified AMF DNA from 44% (21/48) of the root but not leaf samples, indicating specimen contamination was negligible. As expected, there were significant differences in AMF composition between plant species (P < 0.05). However, no differences in AMF communities were detected through time, possibly due to limited sample size and low amplification rates in recent collections. DISCUSSION: Herbaria have potential as sources of valuable belowground microbial data to answer questions across geographic, temporal, and taxonomic scales otherwise not feasible. Ongoing methodological developments will only magnify this potential. Further tests are needed to determine curatorial practices that maximize this innovative use of herbarium specimens. John Wiley and Sons Inc. 2019-02-28 /pmc/articles/PMC6476165/ /pubmed/31024779 http://dx.doi.org/10.1002/aps3.1223 Text en © 2019 Heberling and Burke. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Application Articles
Heberling, J. Mason
Burke, David J.
Utilizing herbarium specimens to quantify historical mycorrhizal communities
title Utilizing herbarium specimens to quantify historical mycorrhizal communities
title_full Utilizing herbarium specimens to quantify historical mycorrhizal communities
title_fullStr Utilizing herbarium specimens to quantify historical mycorrhizal communities
title_full_unstemmed Utilizing herbarium specimens to quantify historical mycorrhizal communities
title_short Utilizing herbarium specimens to quantify historical mycorrhizal communities
title_sort utilizing herbarium specimens to quantify historical mycorrhizal communities
topic Application Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6476165/
https://www.ncbi.nlm.nih.gov/pubmed/31024779
http://dx.doi.org/10.1002/aps3.1223
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