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Transcriptomics and differential gene expression in Whitmania pigra (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes
The medicinal utility of leeches has been demonstrated through decades of use in modern hospital settings, mainly as relievers of venous congestion following flap or digit replantation surgery. In the present study, we sequence and annotate (through BLAST‐ and Gene Ontology‐based approaches) the sal...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6476756/ https://www.ncbi.nlm.nih.gov/pubmed/31031937 http://dx.doi.org/10.1002/ece3.5074 |
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author | Khan, Muhammad Salabat Guan, De‐Long Kvist, Sebastian Ma, Li‐Bin Xie, Juan‐Ying Xu, Sheng‐Quan |
author_facet | Khan, Muhammad Salabat Guan, De‐Long Kvist, Sebastian Ma, Li‐Bin Xie, Juan‐Ying Xu, Sheng‐Quan |
author_sort | Khan, Muhammad Salabat |
collection | PubMed |
description | The medicinal utility of leeches has been demonstrated through decades of use in modern hospital settings, mainly as relievers of venous congestion following flap or digit replantation surgery. In the present study, we sequence and annotate (through BLAST‐ and Gene Ontology‐based approaches) the salivary transcriptome of the nonblood feeding hirudinid Whitmania pigra and assess the differential gene expression of anticoagulation factors (through both quantitative real‐time PCR [qRT‐PCR] and in silico‐based methods) during feeding and fasting conditions. This was done in order to evince the diversity of putative anticoagulation factors, as well as estimate the levels of upregulation of genes immediately after feeding. In total, we found sequences with demonstrated orthology (via both phylogenetic analyses and BLAST‐based approaches) to seven different proteins that have previously been linked to anticoagulatory capabilities—eglin C, bdellin, granulin, guamerin, hyaluronidase, destabilase I, and lipocalin. All of these were recovered from leeches both in the fasting and in the feeding conditions, but all show signs of upregulation in the feeding leeches. Interestingly, our RNA‐seq effort, coupled with a hypergeometric test, indicated that the differentially expressed genes were disproportionately involved in three main immunological pathways (endocytosis, peroxisome regulation, and lysosome regulation). The results and implications of the finding of anticoagulants in this nonblood feeding leech and the putative upregulation of anticoagulation factors after feeding are briefly discussed in an evolutionary context. |
format | Online Article Text |
id | pubmed-6476756 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-64767562019-04-26 Transcriptomics and differential gene expression in Whitmania pigra (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes Khan, Muhammad Salabat Guan, De‐Long Kvist, Sebastian Ma, Li‐Bin Xie, Juan‐Ying Xu, Sheng‐Quan Ecol Evol Original Research The medicinal utility of leeches has been demonstrated through decades of use in modern hospital settings, mainly as relievers of venous congestion following flap or digit replantation surgery. In the present study, we sequence and annotate (through BLAST‐ and Gene Ontology‐based approaches) the salivary transcriptome of the nonblood feeding hirudinid Whitmania pigra and assess the differential gene expression of anticoagulation factors (through both quantitative real‐time PCR [qRT‐PCR] and in silico‐based methods) during feeding and fasting conditions. This was done in order to evince the diversity of putative anticoagulation factors, as well as estimate the levels of upregulation of genes immediately after feeding. In total, we found sequences with demonstrated orthology (via both phylogenetic analyses and BLAST‐based approaches) to seven different proteins that have previously been linked to anticoagulatory capabilities—eglin C, bdellin, granulin, guamerin, hyaluronidase, destabilase I, and lipocalin. All of these were recovered from leeches both in the fasting and in the feeding conditions, but all show signs of upregulation in the feeding leeches. Interestingly, our RNA‐seq effort, coupled with a hypergeometric test, indicated that the differentially expressed genes were disproportionately involved in three main immunological pathways (endocytosis, peroxisome regulation, and lysosome regulation). The results and implications of the finding of anticoagulants in this nonblood feeding leech and the putative upregulation of anticoagulation factors after feeding are briefly discussed in an evolutionary context. John Wiley and Sons Inc. 2019-03-18 /pmc/articles/PMC6476756/ /pubmed/31031937 http://dx.doi.org/10.1002/ece3.5074 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Khan, Muhammad Salabat Guan, De‐Long Kvist, Sebastian Ma, Li‐Bin Xie, Juan‐Ying Xu, Sheng‐Quan Transcriptomics and differential gene expression in Whitmania pigra (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes |
title | Transcriptomics and differential gene expression in Whitmania pigra (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes |
title_full | Transcriptomics and differential gene expression in Whitmania pigra (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes |
title_fullStr | Transcriptomics and differential gene expression in Whitmania pigra (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes |
title_full_unstemmed | Transcriptomics and differential gene expression in Whitmania pigra (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes |
title_short | Transcriptomics and differential gene expression in Whitmania pigra (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes |
title_sort | transcriptomics and differential gene expression in whitmania pigra (annelida: clitellata: hirudinida: hirudinidae): contrasting feeding and fasting modes |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6476756/ https://www.ncbi.nlm.nih.gov/pubmed/31031937 http://dx.doi.org/10.1002/ece3.5074 |
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