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Exploring and mapping the universe of evolutionary graphs identifies structural properties affecting fixation probability and time
Population structure can be modeled by evolutionary graphs, which can have a substantial influence on the fate of mutants. Individuals are located on the nodes of these graphs, competing to take over the graph via the links. Applications for this framework range from the ecology of river systems and...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6478964/ https://www.ncbi.nlm.nih.gov/pubmed/31044162 http://dx.doi.org/10.1038/s42003-019-0374-x |
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author | Möller, Marius Hindersin, Laura Traulsen, Arne |
author_facet | Möller, Marius Hindersin, Laura Traulsen, Arne |
author_sort | Möller, Marius |
collection | PubMed |
description | Population structure can be modeled by evolutionary graphs, which can have a substantial influence on the fate of mutants. Individuals are located on the nodes of these graphs, competing to take over the graph via the links. Applications for this framework range from the ecology of river systems and cancer initiation in colonic crypts to biotechnological search for optimal mutations. In all these applications, both the probability of fixation and the associated time are of interest. We study this problem for all undirected and unweighted graphs up to a certain size. We devise a genetic algorithm to find graphs with high or low fixation probability and short or long fixation time and study their structure searching for common themes. Our work unravels structural properties that maximize or minimize fixation probability and time, which allows us to contribute to a first map of the universe of evolutionary graphs. |
format | Online Article Text |
id | pubmed-6478964 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-64789642019-05-01 Exploring and mapping the universe of evolutionary graphs identifies structural properties affecting fixation probability and time Möller, Marius Hindersin, Laura Traulsen, Arne Commun Biol Article Population structure can be modeled by evolutionary graphs, which can have a substantial influence on the fate of mutants. Individuals are located on the nodes of these graphs, competing to take over the graph via the links. Applications for this framework range from the ecology of river systems and cancer initiation in colonic crypts to biotechnological search for optimal mutations. In all these applications, both the probability of fixation and the associated time are of interest. We study this problem for all undirected and unweighted graphs up to a certain size. We devise a genetic algorithm to find graphs with high or low fixation probability and short or long fixation time and study their structure searching for common themes. Our work unravels structural properties that maximize or minimize fixation probability and time, which allows us to contribute to a first map of the universe of evolutionary graphs. Nature Publishing Group UK 2019-04-23 /pmc/articles/PMC6478964/ /pubmed/31044162 http://dx.doi.org/10.1038/s42003-019-0374-x Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Möller, Marius Hindersin, Laura Traulsen, Arne Exploring and mapping the universe of evolutionary graphs identifies structural properties affecting fixation probability and time |
title | Exploring and mapping the universe of evolutionary graphs identifies structural properties affecting fixation probability and time |
title_full | Exploring and mapping the universe of evolutionary graphs identifies structural properties affecting fixation probability and time |
title_fullStr | Exploring and mapping the universe of evolutionary graphs identifies structural properties affecting fixation probability and time |
title_full_unstemmed | Exploring and mapping the universe of evolutionary graphs identifies structural properties affecting fixation probability and time |
title_short | Exploring and mapping the universe of evolutionary graphs identifies structural properties affecting fixation probability and time |
title_sort | exploring and mapping the universe of evolutionary graphs identifies structural properties affecting fixation probability and time |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6478964/ https://www.ncbi.nlm.nih.gov/pubmed/31044162 http://dx.doi.org/10.1038/s42003-019-0374-x |
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