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GatewayNet: a form of sequential rule mining
BACKGROUND: The gateway hypothesis (and particularly the prediction of developmental stages in drug abuse) has been a subject of protracted debate since the 1970s. Extensive research has gone into this subject, but has yielded contradictory findings. We propose an algorithm for detecting both associ...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6480909/ https://www.ncbi.nlm.nih.gov/pubmed/31014328 http://dx.doi.org/10.1186/s12911-019-0810-3 |
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author | Kilgore, Phillip C. S. R. Korneeva, Nadejda Arnold, Thomas C. Trutschl, Marjan Cvek, Urška |
author_facet | Kilgore, Phillip C. S. R. Korneeva, Nadejda Arnold, Thomas C. Trutschl, Marjan Cvek, Urška |
author_sort | Kilgore, Phillip C. S. R. |
collection | PubMed |
description | BACKGROUND: The gateway hypothesis (and particularly the prediction of developmental stages in drug abuse) has been a subject of protracted debate since the 1970s. Extensive research has gone into this subject, but has yielded contradictory findings. We propose an algorithm for detecting both association and causation relationships given a discrete sequence of events, which we believe will be useful in addressing the validity of the gateway hypothesis. To assess the gateway hypothesis, we developed the GatewayNet algorithm, a refinement of sequential rule mining called initiation rule mining. After a brief mathematical definition, we describe how to perform initiation rule mining and how to infer causal relationships from its rules (“gateway rules”). We tested GatewayNet against data for which relationships were known. After constructing a transaction database using a first-order Markov chain, we mined it to produce a gateway network. We then discuss various incarnations of the gateway network. We then evaluated the performance of GatewayNet on urine drug screening data collected from the emergency department at LSU Health Sciences Center in Shreveport. A de-identified database of urine drug screenings ordered by the department between August 1998 and June 2011 was collected and then restricted to patients having at least one screening succeeding their first positive drug screening result. RESULTS: In the synthetic data, a chain of gateway rules was found in the network which demonstrated causation. We did not find any evidence of gateway rules in the empirical data, but we were able to isolate two documented transitions into benzodiazepine use. CONCLUSIONS: We conclude that GatewayNet may show promise not only for substance use data, but other data involving sequences of events. We also express future goals for GatewayNet, including optimizing it for speed. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12911-019-0810-3) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6480909 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-64809092019-05-02 GatewayNet: a form of sequential rule mining Kilgore, Phillip C. S. R. Korneeva, Nadejda Arnold, Thomas C. Trutschl, Marjan Cvek, Urška BMC Med Inform Decis Mak Software BACKGROUND: The gateway hypothesis (and particularly the prediction of developmental stages in drug abuse) has been a subject of protracted debate since the 1970s. Extensive research has gone into this subject, but has yielded contradictory findings. We propose an algorithm for detecting both association and causation relationships given a discrete sequence of events, which we believe will be useful in addressing the validity of the gateway hypothesis. To assess the gateway hypothesis, we developed the GatewayNet algorithm, a refinement of sequential rule mining called initiation rule mining. After a brief mathematical definition, we describe how to perform initiation rule mining and how to infer causal relationships from its rules (“gateway rules”). We tested GatewayNet against data for which relationships were known. After constructing a transaction database using a first-order Markov chain, we mined it to produce a gateway network. We then discuss various incarnations of the gateway network. We then evaluated the performance of GatewayNet on urine drug screening data collected from the emergency department at LSU Health Sciences Center in Shreveport. A de-identified database of urine drug screenings ordered by the department between August 1998 and June 2011 was collected and then restricted to patients having at least one screening succeeding their first positive drug screening result. RESULTS: In the synthetic data, a chain of gateway rules was found in the network which demonstrated causation. We did not find any evidence of gateway rules in the empirical data, but we were able to isolate two documented transitions into benzodiazepine use. CONCLUSIONS: We conclude that GatewayNet may show promise not only for substance use data, but other data involving sequences of events. We also express future goals for GatewayNet, including optimizing it for speed. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12911-019-0810-3) contains supplementary material, which is available to authorized users. BioMed Central 2019-04-23 /pmc/articles/PMC6480909/ /pubmed/31014328 http://dx.doi.org/10.1186/s12911-019-0810-3 Text en © The Author(s) 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Software Kilgore, Phillip C. S. R. Korneeva, Nadejda Arnold, Thomas C. Trutschl, Marjan Cvek, Urška GatewayNet: a form of sequential rule mining |
title | GatewayNet: a form of sequential rule mining |
title_full | GatewayNet: a form of sequential rule mining |
title_fullStr | GatewayNet: a form of sequential rule mining |
title_full_unstemmed | GatewayNet: a form of sequential rule mining |
title_short | GatewayNet: a form of sequential rule mining |
title_sort | gatewaynet: a form of sequential rule mining |
topic | Software |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6480909/ https://www.ncbi.nlm.nih.gov/pubmed/31014328 http://dx.doi.org/10.1186/s12911-019-0810-3 |
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