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Clinical validation of the tempus xT next-generation targeted oncology sequencing assay
We developed and clinically validated a hybrid capture next generation sequencing assay to detect somatic alterations and microsatellite instability in solid tumors and hematologic malignancies. This targeted oncology assay utilizes tumor-normal matched samples for highly accurate somatic alteration...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6481324/ https://www.ncbi.nlm.nih.gov/pubmed/31040929 http://dx.doi.org/10.18632/oncotarget.26797 |
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author | Beaubier, Nike Tell, Robert Lau, Denise Parsons, Jerod R. Bush, Stephen Perera, Jason Sorrells, Shelly Baker, Timothy Chang, Alan Michuda, Jackson Iguartua, Catherine MacNeil, Shelley Shah, Kaanan Ellis, Philip Yeatts, Kimberly Mahon, Brett Taxter, Timothy Bontrager, Martin Khan, Aly Huether, Robert Lefkofsky, Eric White, Kevin P. |
author_facet | Beaubier, Nike Tell, Robert Lau, Denise Parsons, Jerod R. Bush, Stephen Perera, Jason Sorrells, Shelly Baker, Timothy Chang, Alan Michuda, Jackson Iguartua, Catherine MacNeil, Shelley Shah, Kaanan Ellis, Philip Yeatts, Kimberly Mahon, Brett Taxter, Timothy Bontrager, Martin Khan, Aly Huether, Robert Lefkofsky, Eric White, Kevin P. |
author_sort | Beaubier, Nike |
collection | PubMed |
description | We developed and clinically validated a hybrid capture next generation sequencing assay to detect somatic alterations and microsatellite instability in solid tumors and hematologic malignancies. This targeted oncology assay utilizes tumor-normal matched samples for highly accurate somatic alteration calling and whole transcriptome RNA sequencing for unbiased identification of gene fusion events. The assay was validated with a combination of clinical specimens and cell lines, and recorded a sensitivity of 99.1% for single nucleotide variants, 98.1% for indels, 99.9% for gene rearrangements, 98.4% for copy number variations, and 99.9% for microsatellite instability detection. This assay presents a wide array of data for clinical management and clinical trial enrollment while conserving limited tissue. |
format | Online Article Text |
id | pubmed-6481324 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-64813242019-04-30 Clinical validation of the tempus xT next-generation targeted oncology sequencing assay Beaubier, Nike Tell, Robert Lau, Denise Parsons, Jerod R. Bush, Stephen Perera, Jason Sorrells, Shelly Baker, Timothy Chang, Alan Michuda, Jackson Iguartua, Catherine MacNeil, Shelley Shah, Kaanan Ellis, Philip Yeatts, Kimberly Mahon, Brett Taxter, Timothy Bontrager, Martin Khan, Aly Huether, Robert Lefkofsky, Eric White, Kevin P. Oncotarget Research Paper We developed and clinically validated a hybrid capture next generation sequencing assay to detect somatic alterations and microsatellite instability in solid tumors and hematologic malignancies. This targeted oncology assay utilizes tumor-normal matched samples for highly accurate somatic alteration calling and whole transcriptome RNA sequencing for unbiased identification of gene fusion events. The assay was validated with a combination of clinical specimens and cell lines, and recorded a sensitivity of 99.1% for single nucleotide variants, 98.1% for indels, 99.9% for gene rearrangements, 98.4% for copy number variations, and 99.9% for microsatellite instability detection. This assay presents a wide array of data for clinical management and clinical trial enrollment while conserving limited tissue. Impact Journals LLC 2019-03-22 /pmc/articles/PMC6481324/ /pubmed/31040929 http://dx.doi.org/10.18632/oncotarget.26797 Text en Copyright: © 2019 Beaubier et al. http://creativecommons.org/licenses/by/3.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC-BY), which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Research Paper Beaubier, Nike Tell, Robert Lau, Denise Parsons, Jerod R. Bush, Stephen Perera, Jason Sorrells, Shelly Baker, Timothy Chang, Alan Michuda, Jackson Iguartua, Catherine MacNeil, Shelley Shah, Kaanan Ellis, Philip Yeatts, Kimberly Mahon, Brett Taxter, Timothy Bontrager, Martin Khan, Aly Huether, Robert Lefkofsky, Eric White, Kevin P. Clinical validation of the tempus xT next-generation targeted oncology sequencing assay |
title | Clinical validation of the tempus xT next-generation targeted oncology sequencing assay |
title_full | Clinical validation of the tempus xT next-generation targeted oncology sequencing assay |
title_fullStr | Clinical validation of the tempus xT next-generation targeted oncology sequencing assay |
title_full_unstemmed | Clinical validation of the tempus xT next-generation targeted oncology sequencing assay |
title_short | Clinical validation of the tempus xT next-generation targeted oncology sequencing assay |
title_sort | clinical validation of the tempus xt next-generation targeted oncology sequencing assay |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6481324/ https://www.ncbi.nlm.nih.gov/pubmed/31040929 http://dx.doi.org/10.18632/oncotarget.26797 |
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