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Clinical validation of the tempus xT next-generation targeted oncology sequencing assay

We developed and clinically validated a hybrid capture next generation sequencing assay to detect somatic alterations and microsatellite instability in solid tumors and hematologic malignancies. This targeted oncology assay utilizes tumor-normal matched samples for highly accurate somatic alteration...

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Autores principales: Beaubier, Nike, Tell, Robert, Lau, Denise, Parsons, Jerod R., Bush, Stephen, Perera, Jason, Sorrells, Shelly, Baker, Timothy, Chang, Alan, Michuda, Jackson, Iguartua, Catherine, MacNeil, Shelley, Shah, Kaanan, Ellis, Philip, Yeatts, Kimberly, Mahon, Brett, Taxter, Timothy, Bontrager, Martin, Khan, Aly, Huether, Robert, Lefkofsky, Eric, White, Kevin P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6481324/
https://www.ncbi.nlm.nih.gov/pubmed/31040929
http://dx.doi.org/10.18632/oncotarget.26797
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author Beaubier, Nike
Tell, Robert
Lau, Denise
Parsons, Jerod R.
Bush, Stephen
Perera, Jason
Sorrells, Shelly
Baker, Timothy
Chang, Alan
Michuda, Jackson
Iguartua, Catherine
MacNeil, Shelley
Shah, Kaanan
Ellis, Philip
Yeatts, Kimberly
Mahon, Brett
Taxter, Timothy
Bontrager, Martin
Khan, Aly
Huether, Robert
Lefkofsky, Eric
White, Kevin P.
author_facet Beaubier, Nike
Tell, Robert
Lau, Denise
Parsons, Jerod R.
Bush, Stephen
Perera, Jason
Sorrells, Shelly
Baker, Timothy
Chang, Alan
Michuda, Jackson
Iguartua, Catherine
MacNeil, Shelley
Shah, Kaanan
Ellis, Philip
Yeatts, Kimberly
Mahon, Brett
Taxter, Timothy
Bontrager, Martin
Khan, Aly
Huether, Robert
Lefkofsky, Eric
White, Kevin P.
author_sort Beaubier, Nike
collection PubMed
description We developed and clinically validated a hybrid capture next generation sequencing assay to detect somatic alterations and microsatellite instability in solid tumors and hematologic malignancies. This targeted oncology assay utilizes tumor-normal matched samples for highly accurate somatic alteration calling and whole transcriptome RNA sequencing for unbiased identification of gene fusion events. The assay was validated with a combination of clinical specimens and cell lines, and recorded a sensitivity of 99.1% for single nucleotide variants, 98.1% for indels, 99.9% for gene rearrangements, 98.4% for copy number variations, and 99.9% for microsatellite instability detection. This assay presents a wide array of data for clinical management and clinical trial enrollment while conserving limited tissue.
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spelling pubmed-64813242019-04-30 Clinical validation of the tempus xT next-generation targeted oncology sequencing assay Beaubier, Nike Tell, Robert Lau, Denise Parsons, Jerod R. Bush, Stephen Perera, Jason Sorrells, Shelly Baker, Timothy Chang, Alan Michuda, Jackson Iguartua, Catherine MacNeil, Shelley Shah, Kaanan Ellis, Philip Yeatts, Kimberly Mahon, Brett Taxter, Timothy Bontrager, Martin Khan, Aly Huether, Robert Lefkofsky, Eric White, Kevin P. Oncotarget Research Paper We developed and clinically validated a hybrid capture next generation sequencing assay to detect somatic alterations and microsatellite instability in solid tumors and hematologic malignancies. This targeted oncology assay utilizes tumor-normal matched samples for highly accurate somatic alteration calling and whole transcriptome RNA sequencing for unbiased identification of gene fusion events. The assay was validated with a combination of clinical specimens and cell lines, and recorded a sensitivity of 99.1% for single nucleotide variants, 98.1% for indels, 99.9% for gene rearrangements, 98.4% for copy number variations, and 99.9% for microsatellite instability detection. This assay presents a wide array of data for clinical management and clinical trial enrollment while conserving limited tissue. Impact Journals LLC 2019-03-22 /pmc/articles/PMC6481324/ /pubmed/31040929 http://dx.doi.org/10.18632/oncotarget.26797 Text en Copyright: © 2019 Beaubier et al. http://creativecommons.org/licenses/by/3.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC-BY), which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Research Paper
Beaubier, Nike
Tell, Robert
Lau, Denise
Parsons, Jerod R.
Bush, Stephen
Perera, Jason
Sorrells, Shelly
Baker, Timothy
Chang, Alan
Michuda, Jackson
Iguartua, Catherine
MacNeil, Shelley
Shah, Kaanan
Ellis, Philip
Yeatts, Kimberly
Mahon, Brett
Taxter, Timothy
Bontrager, Martin
Khan, Aly
Huether, Robert
Lefkofsky, Eric
White, Kevin P.
Clinical validation of the tempus xT next-generation targeted oncology sequencing assay
title Clinical validation of the tempus xT next-generation targeted oncology sequencing assay
title_full Clinical validation of the tempus xT next-generation targeted oncology sequencing assay
title_fullStr Clinical validation of the tempus xT next-generation targeted oncology sequencing assay
title_full_unstemmed Clinical validation of the tempus xT next-generation targeted oncology sequencing assay
title_short Clinical validation of the tempus xT next-generation targeted oncology sequencing assay
title_sort clinical validation of the tempus xt next-generation targeted oncology sequencing assay
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6481324/
https://www.ncbi.nlm.nih.gov/pubmed/31040929
http://dx.doi.org/10.18632/oncotarget.26797
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