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Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets

The mechanisms underlying the oncogenesis and progression of lung adenocarcinoma (LUAD) are currently unclear. The discovery of competitive endogenous RNA (ceRNA) regulatory networks has provided a new direction for the treatment and prognosis of patients with LUAD. However, the mechanism of action...

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Autores principales: Wang, Yuanyong, Lu, Tong, Wo, Yang, Sun, Xiao, Li, Shicheng, Miao, Shuncheng, Dong, Yanting, Leng, Xiaoliang, Jiao, Wenjie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6485208/
https://www.ncbi.nlm.nih.gov/pubmed/31065463
http://dx.doi.org/10.7717/peerj.6809
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author Wang, Yuanyong
Lu, Tong
Wo, Yang
Sun, Xiao
Li, Shicheng
Miao, Shuncheng
Dong, Yanting
Leng, Xiaoliang
Jiao, Wenjie
author_facet Wang, Yuanyong
Lu, Tong
Wo, Yang
Sun, Xiao
Li, Shicheng
Miao, Shuncheng
Dong, Yanting
Leng, Xiaoliang
Jiao, Wenjie
author_sort Wang, Yuanyong
collection PubMed
description The mechanisms underlying the oncogenesis and progression of lung adenocarcinoma (LUAD) are currently unclear. The discovery of competitive endogenous RNA (ceRNA) regulatory networks has provided a new direction for the treatment and prognosis of patients with LUAD. However, the mechanism of action of ceRNA in LUAD remains elusive. In the present study, differentially expressed mRNAs, microRNAs (miRs) and long non-coding RNAs from the cancer genome atlas database were screened. CeRNAs for LUAD were then identified using online prediction software. Among the ceRNAs identified, family with sequence similarity 83 member A (FAM83A), miR-34c-5p, KCNQ1OT1 and FLJ26245 were observed to be significantly associated with the overall survival of patients with LUAD. Of note, FAM83A has potential significance in drug resistance, and may present a candidate biomarker for the prognosis and treatment of patients with LUAD.
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spelling pubmed-64852082019-05-07 Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets Wang, Yuanyong Lu, Tong Wo, Yang Sun, Xiao Li, Shicheng Miao, Shuncheng Dong, Yanting Leng, Xiaoliang Jiao, Wenjie PeerJ Bioinformatics The mechanisms underlying the oncogenesis and progression of lung adenocarcinoma (LUAD) are currently unclear. The discovery of competitive endogenous RNA (ceRNA) regulatory networks has provided a new direction for the treatment and prognosis of patients with LUAD. However, the mechanism of action of ceRNA in LUAD remains elusive. In the present study, differentially expressed mRNAs, microRNAs (miRs) and long non-coding RNAs from the cancer genome atlas database were screened. CeRNAs for LUAD were then identified using online prediction software. Among the ceRNAs identified, family with sequence similarity 83 member A (FAM83A), miR-34c-5p, KCNQ1OT1 and FLJ26245 were observed to be significantly associated with the overall survival of patients with LUAD. Of note, FAM83A has potential significance in drug resistance, and may present a candidate biomarker for the prognosis and treatment of patients with LUAD. PeerJ Inc. 2019-04-23 /pmc/articles/PMC6485208/ /pubmed/31065463 http://dx.doi.org/10.7717/peerj.6809 Text en © 2019 Wang et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Wang, Yuanyong
Lu, Tong
Wo, Yang
Sun, Xiao
Li, Shicheng
Miao, Shuncheng
Dong, Yanting
Leng, Xiaoliang
Jiao, Wenjie
Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets
title Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets
title_full Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets
title_fullStr Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets
title_full_unstemmed Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets
title_short Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets
title_sort identification of a putative competitive endogenous rna network for lung adenocarcinoma using tcga datasets
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6485208/
https://www.ncbi.nlm.nih.gov/pubmed/31065463
http://dx.doi.org/10.7717/peerj.6809
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