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Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets
The mechanisms underlying the oncogenesis and progression of lung adenocarcinoma (LUAD) are currently unclear. The discovery of competitive endogenous RNA (ceRNA) regulatory networks has provided a new direction for the treatment and prognosis of patients with LUAD. However, the mechanism of action...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6485208/ https://www.ncbi.nlm.nih.gov/pubmed/31065463 http://dx.doi.org/10.7717/peerj.6809 |
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author | Wang, Yuanyong Lu, Tong Wo, Yang Sun, Xiao Li, Shicheng Miao, Shuncheng Dong, Yanting Leng, Xiaoliang Jiao, Wenjie |
author_facet | Wang, Yuanyong Lu, Tong Wo, Yang Sun, Xiao Li, Shicheng Miao, Shuncheng Dong, Yanting Leng, Xiaoliang Jiao, Wenjie |
author_sort | Wang, Yuanyong |
collection | PubMed |
description | The mechanisms underlying the oncogenesis and progression of lung adenocarcinoma (LUAD) are currently unclear. The discovery of competitive endogenous RNA (ceRNA) regulatory networks has provided a new direction for the treatment and prognosis of patients with LUAD. However, the mechanism of action of ceRNA in LUAD remains elusive. In the present study, differentially expressed mRNAs, microRNAs (miRs) and long non-coding RNAs from the cancer genome atlas database were screened. CeRNAs for LUAD were then identified using online prediction software. Among the ceRNAs identified, family with sequence similarity 83 member A (FAM83A), miR-34c-5p, KCNQ1OT1 and FLJ26245 were observed to be significantly associated with the overall survival of patients with LUAD. Of note, FAM83A has potential significance in drug resistance, and may present a candidate biomarker for the prognosis and treatment of patients with LUAD. |
format | Online Article Text |
id | pubmed-6485208 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-64852082019-05-07 Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets Wang, Yuanyong Lu, Tong Wo, Yang Sun, Xiao Li, Shicheng Miao, Shuncheng Dong, Yanting Leng, Xiaoliang Jiao, Wenjie PeerJ Bioinformatics The mechanisms underlying the oncogenesis and progression of lung adenocarcinoma (LUAD) are currently unclear. The discovery of competitive endogenous RNA (ceRNA) regulatory networks has provided a new direction for the treatment and prognosis of patients with LUAD. However, the mechanism of action of ceRNA in LUAD remains elusive. In the present study, differentially expressed mRNAs, microRNAs (miRs) and long non-coding RNAs from the cancer genome atlas database were screened. CeRNAs for LUAD were then identified using online prediction software. Among the ceRNAs identified, family with sequence similarity 83 member A (FAM83A), miR-34c-5p, KCNQ1OT1 and FLJ26245 were observed to be significantly associated with the overall survival of patients with LUAD. Of note, FAM83A has potential significance in drug resistance, and may present a candidate biomarker for the prognosis and treatment of patients with LUAD. PeerJ Inc. 2019-04-23 /pmc/articles/PMC6485208/ /pubmed/31065463 http://dx.doi.org/10.7717/peerj.6809 Text en © 2019 Wang et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Wang, Yuanyong Lu, Tong Wo, Yang Sun, Xiao Li, Shicheng Miao, Shuncheng Dong, Yanting Leng, Xiaoliang Jiao, Wenjie Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets |
title | Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets |
title_full | Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets |
title_fullStr | Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets |
title_full_unstemmed | Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets |
title_short | Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets |
title_sort | identification of a putative competitive endogenous rna network for lung adenocarcinoma using tcga datasets |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6485208/ https://www.ncbi.nlm.nih.gov/pubmed/31065463 http://dx.doi.org/10.7717/peerj.6809 |
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