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A network approach for identifying and delimiting biogeographical regions
Biogeographical regions (geographically distinct assemblages of species and communities) constitute a cornerstone for ecology, biogeography, evolution and conservation biology. Species turnover measures are often used to quantify spatial biodiversity patterns, but algorithms based on similarity can...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6485529/ https://www.ncbi.nlm.nih.gov/pubmed/25907961 http://dx.doi.org/10.1038/ncomms7848 |
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author | Vilhena, Daril A. Antonelli, Alexandre |
author_facet | Vilhena, Daril A. Antonelli, Alexandre |
author_sort | Vilhena, Daril A. |
collection | PubMed |
description | Biogeographical regions (geographically distinct assemblages of species and communities) constitute a cornerstone for ecology, biogeography, evolution and conservation biology. Species turnover measures are often used to quantify spatial biodiversity patterns, but algorithms based on similarity can be sensitive to common sampling biases in species distribution data. Here we apply a community detection approach from network theory that incorporates complex, higher order presence-absence patterns. We demonstrate the performance of the method by applying it to all amphibian species in the world (c. 6,100 species), all vascular plant species of the USA (c. 17,600), and a hypothetical dataset containing a zone of biotic transition. In comparison with current methods, our approach tackles the challenges posed by transition zones and succeeds in retrieving a larger number of commonly recognised biogeographical regions. This method can be applied to generate objective, data derived identification and delimitation of the world’s biogeographical regions. |
format | Online Article Text |
id | pubmed-6485529 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
record_format | MEDLINE/PubMed |
spelling | pubmed-64855292019-04-26 A network approach for identifying and delimiting biogeographical regions Vilhena, Daril A. Antonelli, Alexandre Nat Commun Article Biogeographical regions (geographically distinct assemblages of species and communities) constitute a cornerstone for ecology, biogeography, evolution and conservation biology. Species turnover measures are often used to quantify spatial biodiversity patterns, but algorithms based on similarity can be sensitive to common sampling biases in species distribution data. Here we apply a community detection approach from network theory that incorporates complex, higher order presence-absence patterns. We demonstrate the performance of the method by applying it to all amphibian species in the world (c. 6,100 species), all vascular plant species of the USA (c. 17,600), and a hypothetical dataset containing a zone of biotic transition. In comparison with current methods, our approach tackles the challenges posed by transition zones and succeeds in retrieving a larger number of commonly recognised biogeographical regions. This method can be applied to generate objective, data derived identification and delimitation of the world’s biogeographical regions. 2015-04-24 /pmc/articles/PMC6485529/ /pubmed/25907961 http://dx.doi.org/10.1038/ncomms7848 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Vilhena, Daril A. Antonelli, Alexandre A network approach for identifying and delimiting biogeographical regions |
title | A network approach for identifying and delimiting biogeographical
regions |
title_full | A network approach for identifying and delimiting biogeographical
regions |
title_fullStr | A network approach for identifying and delimiting biogeographical
regions |
title_full_unstemmed | A network approach for identifying and delimiting biogeographical
regions |
title_short | A network approach for identifying and delimiting biogeographical
regions |
title_sort | network approach for identifying and delimiting biogeographical
regions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6485529/ https://www.ncbi.nlm.nih.gov/pubmed/25907961 http://dx.doi.org/10.1038/ncomms7848 |
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