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Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis

Circular RNAs (circRNAs) are a large class of noncoding RNAs that have potential regulatory roles in disease pathogenesis and progression. Recently, circRNAs have been found to be expressed in hepatocellular carcinoma (HCC) tissues and involved in the development and metastasis of HCC. However, the...

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Autores principales: Lei, Bo, Zhou, Jian, Xuan, Xiuyun, Tian, Zhiqiang, Zhang, Mengjie, Gao, Weiwu, Lin, Yuxin, Ni, Bing, Pang, Hui, Fan, Weiping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6488130/
https://www.ncbi.nlm.nih.gov/pubmed/30714679
http://dx.doi.org/10.1002/cam4.2010
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author Lei, Bo
Zhou, Jian
Xuan, Xiuyun
Tian, Zhiqiang
Zhang, Mengjie
Gao, Weiwu
Lin, Yuxin
Ni, Bing
Pang, Hui
Fan, Weiping
author_facet Lei, Bo
Zhou, Jian
Xuan, Xiuyun
Tian, Zhiqiang
Zhang, Mengjie
Gao, Weiwu
Lin, Yuxin
Ni, Bing
Pang, Hui
Fan, Weiping
author_sort Lei, Bo
collection PubMed
description Circular RNAs (circRNAs) are a large class of noncoding RNAs that have potential regulatory roles in disease pathogenesis and progression. Recently, circRNAs have been found to be expressed in hepatocellular carcinoma (HCC) tissues and involved in the development and metastasis of HCC. However, the significance of circRNAs in peripheral blood mononuclear cells (PBMCs) of HCC patients remains unclear. In this study, RNA sequencing analysis was performed to identify circRNAs from four HCC patients and three healthy controls to determine the expression pattern of circRNAs in the PBMCs and the circRNAs’ molecular regulatory networks in HCC pathogenesis. A total of 58 circRNAs were found to be significantly changed (≥2 or ≤0.5‐fold) in the PBMCs of HCC patients compared with those of the healthy cases. Six random representative circRNAs (three up‐ and three down‐regulated) were further validated by real‐time RT‐PCR in 72 samples of PBMCs from HCC patients and 30 control subjects. Chi‐square test indicated that one of the up‐regulated circRNA candidates—circ_0000798—was correlated with clinical variables. Highly expressed circ_0000798 was associated with poor overall survival of HCC patients. Receiver operating characteristic curve analysis further revealed that circ_0000798 was discriminating HCC patients from healthy controls. Finally, the predicted competing endogenous RNA network of circ_0000798 showed that it might act as a “sponge” of target microRNAs, that would subsequently regulate the expression of target genes in PBMCs. In summary, this is the first study to comprehensively identify dysregulated circRNAs in PBMCs of HCC patients, and its findings suggest that dysregulated circ_0000798 in PBMCs has potential as a convenient biomarker for diagnosing or prognosticating HCC.
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spelling pubmed-64881302019-05-23 Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis Lei, Bo Zhou, Jian Xuan, Xiuyun Tian, Zhiqiang Zhang, Mengjie Gao, Weiwu Lin, Yuxin Ni, Bing Pang, Hui Fan, Weiping Cancer Med Clinical Cancer Research Circular RNAs (circRNAs) are a large class of noncoding RNAs that have potential regulatory roles in disease pathogenesis and progression. Recently, circRNAs have been found to be expressed in hepatocellular carcinoma (HCC) tissues and involved in the development and metastasis of HCC. However, the significance of circRNAs in peripheral blood mononuclear cells (PBMCs) of HCC patients remains unclear. In this study, RNA sequencing analysis was performed to identify circRNAs from four HCC patients and three healthy controls to determine the expression pattern of circRNAs in the PBMCs and the circRNAs’ molecular regulatory networks in HCC pathogenesis. A total of 58 circRNAs were found to be significantly changed (≥2 or ≤0.5‐fold) in the PBMCs of HCC patients compared with those of the healthy cases. Six random representative circRNAs (three up‐ and three down‐regulated) were further validated by real‐time RT‐PCR in 72 samples of PBMCs from HCC patients and 30 control subjects. Chi‐square test indicated that one of the up‐regulated circRNA candidates—circ_0000798—was correlated with clinical variables. Highly expressed circ_0000798 was associated with poor overall survival of HCC patients. Receiver operating characteristic curve analysis further revealed that circ_0000798 was discriminating HCC patients from healthy controls. Finally, the predicted competing endogenous RNA network of circ_0000798 showed that it might act as a “sponge” of target microRNAs, that would subsequently regulate the expression of target genes in PBMCs. In summary, this is the first study to comprehensively identify dysregulated circRNAs in PBMCs of HCC patients, and its findings suggest that dysregulated circ_0000798 in PBMCs has potential as a convenient biomarker for diagnosing or prognosticating HCC. John Wiley and Sons Inc. 2019-02-04 /pmc/articles/PMC6488130/ /pubmed/30714679 http://dx.doi.org/10.1002/cam4.2010 Text en © 2019 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Clinical Cancer Research
Lei, Bo
Zhou, Jian
Xuan, Xiuyun
Tian, Zhiqiang
Zhang, Mengjie
Gao, Weiwu
Lin, Yuxin
Ni, Bing
Pang, Hui
Fan, Weiping
Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis
title Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis
title_full Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis
title_fullStr Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis
title_full_unstemmed Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis
title_short Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis
title_sort circular rna expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis
topic Clinical Cancer Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6488130/
https://www.ncbi.nlm.nih.gov/pubmed/30714679
http://dx.doi.org/10.1002/cam4.2010
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