Cargando…
Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis
Circular RNAs (circRNAs) are a large class of noncoding RNAs that have potential regulatory roles in disease pathogenesis and progression. Recently, circRNAs have been found to be expressed in hepatocellular carcinoma (HCC) tissues and involved in the development and metastasis of HCC. However, the...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6488130/ https://www.ncbi.nlm.nih.gov/pubmed/30714679 http://dx.doi.org/10.1002/cam4.2010 |
_version_ | 1783414606168850432 |
---|---|
author | Lei, Bo Zhou, Jian Xuan, Xiuyun Tian, Zhiqiang Zhang, Mengjie Gao, Weiwu Lin, Yuxin Ni, Bing Pang, Hui Fan, Weiping |
author_facet | Lei, Bo Zhou, Jian Xuan, Xiuyun Tian, Zhiqiang Zhang, Mengjie Gao, Weiwu Lin, Yuxin Ni, Bing Pang, Hui Fan, Weiping |
author_sort | Lei, Bo |
collection | PubMed |
description | Circular RNAs (circRNAs) are a large class of noncoding RNAs that have potential regulatory roles in disease pathogenesis and progression. Recently, circRNAs have been found to be expressed in hepatocellular carcinoma (HCC) tissues and involved in the development and metastasis of HCC. However, the significance of circRNAs in peripheral blood mononuclear cells (PBMCs) of HCC patients remains unclear. In this study, RNA sequencing analysis was performed to identify circRNAs from four HCC patients and three healthy controls to determine the expression pattern of circRNAs in the PBMCs and the circRNAs’ molecular regulatory networks in HCC pathogenesis. A total of 58 circRNAs were found to be significantly changed (≥2 or ≤0.5‐fold) in the PBMCs of HCC patients compared with those of the healthy cases. Six random representative circRNAs (three up‐ and three down‐regulated) were further validated by real‐time RT‐PCR in 72 samples of PBMCs from HCC patients and 30 control subjects. Chi‐square test indicated that one of the up‐regulated circRNA candidates—circ_0000798—was correlated with clinical variables. Highly expressed circ_0000798 was associated with poor overall survival of HCC patients. Receiver operating characteristic curve analysis further revealed that circ_0000798 was discriminating HCC patients from healthy controls. Finally, the predicted competing endogenous RNA network of circ_0000798 showed that it might act as a “sponge” of target microRNAs, that would subsequently regulate the expression of target genes in PBMCs. In summary, this is the first study to comprehensively identify dysregulated circRNAs in PBMCs of HCC patients, and its findings suggest that dysregulated circ_0000798 in PBMCs has potential as a convenient biomarker for diagnosing or prognosticating HCC. |
format | Online Article Text |
id | pubmed-6488130 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-64881302019-05-23 Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis Lei, Bo Zhou, Jian Xuan, Xiuyun Tian, Zhiqiang Zhang, Mengjie Gao, Weiwu Lin, Yuxin Ni, Bing Pang, Hui Fan, Weiping Cancer Med Clinical Cancer Research Circular RNAs (circRNAs) are a large class of noncoding RNAs that have potential regulatory roles in disease pathogenesis and progression. Recently, circRNAs have been found to be expressed in hepatocellular carcinoma (HCC) tissues and involved in the development and metastasis of HCC. However, the significance of circRNAs in peripheral blood mononuclear cells (PBMCs) of HCC patients remains unclear. In this study, RNA sequencing analysis was performed to identify circRNAs from four HCC patients and three healthy controls to determine the expression pattern of circRNAs in the PBMCs and the circRNAs’ molecular regulatory networks in HCC pathogenesis. A total of 58 circRNAs were found to be significantly changed (≥2 or ≤0.5‐fold) in the PBMCs of HCC patients compared with those of the healthy cases. Six random representative circRNAs (three up‐ and three down‐regulated) were further validated by real‐time RT‐PCR in 72 samples of PBMCs from HCC patients and 30 control subjects. Chi‐square test indicated that one of the up‐regulated circRNA candidates—circ_0000798—was correlated with clinical variables. Highly expressed circ_0000798 was associated with poor overall survival of HCC patients. Receiver operating characteristic curve analysis further revealed that circ_0000798 was discriminating HCC patients from healthy controls. Finally, the predicted competing endogenous RNA network of circ_0000798 showed that it might act as a “sponge” of target microRNAs, that would subsequently regulate the expression of target genes in PBMCs. In summary, this is the first study to comprehensively identify dysregulated circRNAs in PBMCs of HCC patients, and its findings suggest that dysregulated circ_0000798 in PBMCs has potential as a convenient biomarker for diagnosing or prognosticating HCC. John Wiley and Sons Inc. 2019-02-04 /pmc/articles/PMC6488130/ /pubmed/30714679 http://dx.doi.org/10.1002/cam4.2010 Text en © 2019 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Clinical Cancer Research Lei, Bo Zhou, Jian Xuan, Xiuyun Tian, Zhiqiang Zhang, Mengjie Gao, Weiwu Lin, Yuxin Ni, Bing Pang, Hui Fan, Weiping Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis |
title | Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis |
title_full | Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis |
title_fullStr | Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis |
title_full_unstemmed | Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis |
title_short | Circular RNA expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis |
title_sort | circular rna expression profiles of peripheral blood mononuclear cells in hepatocellular carcinoma patients by sequence analysis |
topic | Clinical Cancer Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6488130/ https://www.ncbi.nlm.nih.gov/pubmed/30714679 http://dx.doi.org/10.1002/cam4.2010 |
work_keys_str_mv | AT leibo circularrnaexpressionprofilesofperipheralbloodmononuclearcellsinhepatocellularcarcinomapatientsbysequenceanalysis AT zhoujian circularrnaexpressionprofilesofperipheralbloodmononuclearcellsinhepatocellularcarcinomapatientsbysequenceanalysis AT xuanxiuyun circularrnaexpressionprofilesofperipheralbloodmononuclearcellsinhepatocellularcarcinomapatientsbysequenceanalysis AT tianzhiqiang circularrnaexpressionprofilesofperipheralbloodmononuclearcellsinhepatocellularcarcinomapatientsbysequenceanalysis AT zhangmengjie circularrnaexpressionprofilesofperipheralbloodmononuclearcellsinhepatocellularcarcinomapatientsbysequenceanalysis AT gaoweiwu circularrnaexpressionprofilesofperipheralbloodmononuclearcellsinhepatocellularcarcinomapatientsbysequenceanalysis AT linyuxin circularrnaexpressionprofilesofperipheralbloodmononuclearcellsinhepatocellularcarcinomapatientsbysequenceanalysis AT nibing circularrnaexpressionprofilesofperipheralbloodmononuclearcellsinhepatocellularcarcinomapatientsbysequenceanalysis AT panghui circularrnaexpressionprofilesofperipheralbloodmononuclearcellsinhepatocellularcarcinomapatientsbysequenceanalysis AT fanweiping circularrnaexpressionprofilesofperipheralbloodmononuclearcellsinhepatocellularcarcinomapatientsbysequenceanalysis |