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Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory

An array of sensors, including an HD camera mounted on a Fixed Underwater Observatory (FUO) were used to monitor a cold-water coral (Lophelia pertusa) reef in the Lofoten-Vesterålen area from April to November 2015. Image processing and deep learning enabled extraction of time series describing chan...

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Autores principales: Osterloff, Jonas, Nilssen, Ingunn, Järnegren, Johanna, Van Engeland, Tom, Buhl-Mortensen, Pål, Nattkemper, Tim W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6488648/
https://www.ncbi.nlm.nih.gov/pubmed/31036904
http://dx.doi.org/10.1038/s41598-019-41275-1
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author Osterloff, Jonas
Nilssen, Ingunn
Järnegren, Johanna
Van Engeland, Tom
Buhl-Mortensen, Pål
Nattkemper, Tim W.
author_facet Osterloff, Jonas
Nilssen, Ingunn
Järnegren, Johanna
Van Engeland, Tom
Buhl-Mortensen, Pål
Nattkemper, Tim W.
author_sort Osterloff, Jonas
collection PubMed
description An array of sensors, including an HD camera mounted on a Fixed Underwater Observatory (FUO) were used to monitor a cold-water coral (Lophelia pertusa) reef in the Lofoten-Vesterålen area from April to November 2015. Image processing and deep learning enabled extraction of time series describing changes in coral colour and polyp activity (feeding). The image data was analysed together with data from the other sensors from the same period, to provide new insights into the short- and long-term dynamics in polyp features. The results indicate that diurnal variations and tidal current influenced polyp activity, by controlling the food supply. On a longer time-scale, the coral’s tissue colour changed from white in the spring to slightly red during the summer months, which can be explained by a seasonal change in food supply. Our work shows, that using an effective integrative computational approach, the image time series is a new and rich source of information to understand and monitor the dynamics in underwater environments due to the high temporal resolution and coverage enabled with FUOs.
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spelling pubmed-64886482019-05-16 Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory Osterloff, Jonas Nilssen, Ingunn Järnegren, Johanna Van Engeland, Tom Buhl-Mortensen, Pål Nattkemper, Tim W. Sci Rep Article An array of sensors, including an HD camera mounted on a Fixed Underwater Observatory (FUO) were used to monitor a cold-water coral (Lophelia pertusa) reef in the Lofoten-Vesterålen area from April to November 2015. Image processing and deep learning enabled extraction of time series describing changes in coral colour and polyp activity (feeding). The image data was analysed together with data from the other sensors from the same period, to provide new insights into the short- and long-term dynamics in polyp features. The results indicate that diurnal variations and tidal current influenced polyp activity, by controlling the food supply. On a longer time-scale, the coral’s tissue colour changed from white in the spring to slightly red during the summer months, which can be explained by a seasonal change in food supply. Our work shows, that using an effective integrative computational approach, the image time series is a new and rich source of information to understand and monitor the dynamics in underwater environments due to the high temporal resolution and coverage enabled with FUOs. Nature Publishing Group UK 2019-04-29 /pmc/articles/PMC6488648/ /pubmed/31036904 http://dx.doi.org/10.1038/s41598-019-41275-1 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Osterloff, Jonas
Nilssen, Ingunn
Järnegren, Johanna
Van Engeland, Tom
Buhl-Mortensen, Pål
Nattkemper, Tim W.
Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory
title Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory
title_full Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory
title_fullStr Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory
title_full_unstemmed Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory
title_short Computer vision enables short- and long-term analysis of Lophelia pertusa polyp behaviour and colour from an underwater observatory
title_sort computer vision enables short- and long-term analysis of lophelia pertusa polyp behaviour and colour from an underwater observatory
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6488648/
https://www.ncbi.nlm.nih.gov/pubmed/31036904
http://dx.doi.org/10.1038/s41598-019-41275-1
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