Cargando…

Potential path volume (PPV): a geometric estimator for space use in 3D

BACKGROUND: Many animals move in three dimensions and many animal tracking studies collect the data on their movement in three physical dimensions. However, there is a lack of approaches that consider the vertical dimension when estimating animal space use, which is problematic, as this can lead to...

Descripción completa

Detalles Bibliográficos
Autores principales: Demšar, Urška, Long, Jed A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6489342/
https://www.ncbi.nlm.nih.gov/pubmed/31164985
http://dx.doi.org/10.1186/s40462-019-0158-4
_version_ 1783414806520266752
author Demšar, Urška
Long, Jed A.
author_facet Demšar, Urška
Long, Jed A.
author_sort Demšar, Urška
collection PubMed
description BACKGROUND: Many animals move in three dimensions and many animal tracking studies collect the data on their movement in three physical dimensions. However, there is a lack of approaches that consider the vertical dimension when estimating animal space use, which is problematic, as this can lead to mistakes in quantification of spatial differentiation, level of interaction between individuals or species, and the use of resources at different vertical levels. METHODS: This paper introduces a new geometric estimator for space use in 3D, the Potential Path Volume (PPV). The concept is based on time geography and generalises the accessibility measure, the Potential Path Area (PPA) into three dimensions. We derive the PPV mathematically and present an algorithm for their calculation. RESULTS: We demonstrate the use of the PPV in a case study using an open data set of 3D bird tracking data. We also calculate the size of the PPV to see how this corresponds to trip type (specifically, we calculate PPV sizes for departure/return foraging trips from/to a colony) and evaluate the effect of the temporal sampling on the PPV size. PPV sizes increase with the increased temporal resolution, but we do not see the expected pattern than return PPV should be smaller than departure PPV. We further discuss the problem of different speeds in vertical and horizontal directions that are typical for animal movement and to address this rescale the PPV with the ratio of the two speeds. CONCLUSIONS: The PPV method represents a new tool for space use analysis in movement ecology where object movement occurs in three dimensions, and one which can be extended to numerous different application areas. TRIAL REGISTRATION: N/A ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40462-019-0158-4) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-6489342
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-64893422019-06-04 Potential path volume (PPV): a geometric estimator for space use in 3D Demšar, Urška Long, Jed A. Mov Ecol Methodology Article BACKGROUND: Many animals move in three dimensions and many animal tracking studies collect the data on their movement in three physical dimensions. However, there is a lack of approaches that consider the vertical dimension when estimating animal space use, which is problematic, as this can lead to mistakes in quantification of spatial differentiation, level of interaction between individuals or species, and the use of resources at different vertical levels. METHODS: This paper introduces a new geometric estimator for space use in 3D, the Potential Path Volume (PPV). The concept is based on time geography and generalises the accessibility measure, the Potential Path Area (PPA) into three dimensions. We derive the PPV mathematically and present an algorithm for their calculation. RESULTS: We demonstrate the use of the PPV in a case study using an open data set of 3D bird tracking data. We also calculate the size of the PPV to see how this corresponds to trip type (specifically, we calculate PPV sizes for departure/return foraging trips from/to a colony) and evaluate the effect of the temporal sampling on the PPV size. PPV sizes increase with the increased temporal resolution, but we do not see the expected pattern than return PPV should be smaller than departure PPV. We further discuss the problem of different speeds in vertical and horizontal directions that are typical for animal movement and to address this rescale the PPV with the ratio of the two speeds. CONCLUSIONS: The PPV method represents a new tool for space use analysis in movement ecology where object movement occurs in three dimensions, and one which can be extended to numerous different application areas. TRIAL REGISTRATION: N/A ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40462-019-0158-4) contains supplementary material, which is available to authorized users. BioMed Central 2019-04-29 /pmc/articles/PMC6489342/ /pubmed/31164985 http://dx.doi.org/10.1186/s40462-019-0158-4 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology Article
Demšar, Urška
Long, Jed A.
Potential path volume (PPV): a geometric estimator for space use in 3D
title Potential path volume (PPV): a geometric estimator for space use in 3D
title_full Potential path volume (PPV): a geometric estimator for space use in 3D
title_fullStr Potential path volume (PPV): a geometric estimator for space use in 3D
title_full_unstemmed Potential path volume (PPV): a geometric estimator for space use in 3D
title_short Potential path volume (PPV): a geometric estimator for space use in 3D
title_sort potential path volume (ppv): a geometric estimator for space use in 3d
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6489342/
https://www.ncbi.nlm.nih.gov/pubmed/31164985
http://dx.doi.org/10.1186/s40462-019-0158-4
work_keys_str_mv AT demsarurska potentialpathvolumeppvageometricestimatorforspaceusein3d
AT longjeda potentialpathvolumeppvageometricestimatorforspaceusein3d