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Dual-Personality DICOM-TIFF for Whole Slide Images: A Migration Technique for Legacy Software

Despite recently organized Digital Imaging and Communications in Medicine (DICOM) testing and demonstration events involving numerous participating vendors, it is still the case that scanner manufacturers, software developers, and users continue to depend on proprietary file formats rather than adop...

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Autor principal: Clunie, David A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer - Medknow 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6489422/
https://www.ncbi.nlm.nih.gov/pubmed/31057981
http://dx.doi.org/10.4103/jpi.jpi_93_18
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author Clunie, David A.
author_facet Clunie, David A.
author_sort Clunie, David A.
collection PubMed
description Despite recently organized Digital Imaging and Communications in Medicine (DICOM) testing and demonstration events involving numerous participating vendors, it is still the case that scanner manufacturers, software developers, and users continue to depend on proprietary file formats rather than adopting the standard DICOM whole slide microscopic image object. Many proprietary formats are Tagged Image File Format (TIFF) based, and existing applications and libraries can read tiled TIFF files. The sluggish adoption of DICOM for whole slide image encoding can be temporarily mitigated by the use of dual-personality DICOM-TIFF files. These are compatible with the installed base of TIFF-based software, as well as newer DICOM-based software. The DICOM file format was deliberately designed to support this dual-personality capability for such transitional situations, although it is rarely used. Furthermore, existing TIFF files can be converted into dual-personality DICOM-TIFF without changing the pixel data. This paper demonstrates the feasibility of extending the dual-personality concept to multiframe-tiled pyramidal whole slide images and explores the issues encountered. Open source code and sample converted images are provided for testing.
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spelling pubmed-64894222019-05-03 Dual-Personality DICOM-TIFF for Whole Slide Images: A Migration Technique for Legacy Software Clunie, David A. J Pathol Inform Technical Note Despite recently organized Digital Imaging and Communications in Medicine (DICOM) testing and demonstration events involving numerous participating vendors, it is still the case that scanner manufacturers, software developers, and users continue to depend on proprietary file formats rather than adopting the standard DICOM whole slide microscopic image object. Many proprietary formats are Tagged Image File Format (TIFF) based, and existing applications and libraries can read tiled TIFF files. The sluggish adoption of DICOM for whole slide image encoding can be temporarily mitigated by the use of dual-personality DICOM-TIFF files. These are compatible with the installed base of TIFF-based software, as well as newer DICOM-based software. The DICOM file format was deliberately designed to support this dual-personality capability for such transitional situations, although it is rarely used. Furthermore, existing TIFF files can be converted into dual-personality DICOM-TIFF without changing the pixel data. This paper demonstrates the feasibility of extending the dual-personality concept to multiframe-tiled pyramidal whole slide images and explores the issues encountered. Open source code and sample converted images are provided for testing. Wolters Kluwer - Medknow 2019-04-03 /pmc/articles/PMC6489422/ /pubmed/31057981 http://dx.doi.org/10.4103/jpi.jpi_93_18 Text en Copyright: © 2019 Journal of Pathology Informatics http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms.
spellingShingle Technical Note
Clunie, David A.
Dual-Personality DICOM-TIFF for Whole Slide Images: A Migration Technique for Legacy Software
title Dual-Personality DICOM-TIFF for Whole Slide Images: A Migration Technique for Legacy Software
title_full Dual-Personality DICOM-TIFF for Whole Slide Images: A Migration Technique for Legacy Software
title_fullStr Dual-Personality DICOM-TIFF for Whole Slide Images: A Migration Technique for Legacy Software
title_full_unstemmed Dual-Personality DICOM-TIFF for Whole Slide Images: A Migration Technique for Legacy Software
title_short Dual-Personality DICOM-TIFF for Whole Slide Images: A Migration Technique for Legacy Software
title_sort dual-personality dicom-tiff for whole slide images: a migration technique for legacy software
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6489422/
https://www.ncbi.nlm.nih.gov/pubmed/31057981
http://dx.doi.org/10.4103/jpi.jpi_93_18
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