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Prediction of GABARAP interaction with the GABA type A receptor
We have performed docking simulations on GABARAP interacting with the GABA type A receptor using SwarmDock. We have also used a novel method to study hydration sites on the surface of these two proteins; this method identifies regions around proteins where desolvation is relatively easy, and these a...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6492159/ https://www.ncbi.nlm.nih.gov/pubmed/30218455 http://dx.doi.org/10.1002/prot.25589 |
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author | Irwin, B.W.J. Vukovič, Siniša Payne, M.C. ElGamacy, Mohammad Chau, P.‐L. |
author_facet | Irwin, B.W.J. Vukovič, Siniša Payne, M.C. ElGamacy, Mohammad Chau, P.‐L. |
author_sort | Irwin, B.W.J. |
collection | PubMed |
description | We have performed docking simulations on GABARAP interacting with the GABA type A receptor using SwarmDock. We have also used a novel method to study hydration sites on the surface of these two proteins; this method identifies regions around proteins where desolvation is relatively easy, and these are possible locations where proteins can bind each other. There is a high degree of consistency between the predictions of these two methods. Moreover, we have also identified binding sites on GABARAP for other proteins, and listed possible binding sites for as yet unknown proteins on both GABARAP and the GABA type A receptor intracellular domain. |
format | Online Article Text |
id | pubmed-6492159 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-64921592019-05-06 Prediction of GABARAP interaction with the GABA type A receptor Irwin, B.W.J. Vukovič, Siniša Payne, M.C. ElGamacy, Mohammad Chau, P.‐L. Proteins Research Articles We have performed docking simulations on GABARAP interacting with the GABA type A receptor using SwarmDock. We have also used a novel method to study hydration sites on the surface of these two proteins; this method identifies regions around proteins where desolvation is relatively easy, and these are possible locations where proteins can bind each other. There is a high degree of consistency between the predictions of these two methods. Moreover, we have also identified binding sites on GABARAP for other proteins, and listed possible binding sites for as yet unknown proteins on both GABARAP and the GABA type A receptor intracellular domain. John Wiley & Sons, Inc. 2018-11-04 2018-12 /pmc/articles/PMC6492159/ /pubmed/30218455 http://dx.doi.org/10.1002/prot.25589 Text en © 2018 The Authors. Proteins: Structure, Function, and Bioinformatics published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Irwin, B.W.J. Vukovič, Siniša Payne, M.C. ElGamacy, Mohammad Chau, P.‐L. Prediction of GABARAP interaction with the GABA type A receptor |
title | Prediction of GABARAP interaction with the GABA type A receptor |
title_full | Prediction of GABARAP interaction with the GABA type A receptor |
title_fullStr | Prediction of GABARAP interaction with the GABA type A receptor |
title_full_unstemmed | Prediction of GABARAP interaction with the GABA type A receptor |
title_short | Prediction of GABARAP interaction with the GABA type A receptor |
title_sort | prediction of gabarap interaction with the gaba type a receptor |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6492159/ https://www.ncbi.nlm.nih.gov/pubmed/30218455 http://dx.doi.org/10.1002/prot.25589 |
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