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A space for lattice representation and clustering
Algorithms for quantifying the differences between two lattices are used for Bravais lattice determination, database lookup for unit cells to select candidates for molecular replacement, and recently for clustering to group together images from serial crystallography. It is particularly desirable fo...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6492488/ https://www.ncbi.nlm.nih.gov/pubmed/31041913 http://dx.doi.org/10.1107/S2053273319002729 |
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author | Andrews, Lawrence C. Bernstein, Herbert J. Sauter, Nicholas K. |
author_facet | Andrews, Lawrence C. Bernstein, Herbert J. Sauter, Nicholas K. |
author_sort | Andrews, Lawrence C. |
collection | PubMed |
description | Algorithms for quantifying the differences between two lattices are used for Bravais lattice determination, database lookup for unit cells to select candidates for molecular replacement, and recently for clustering to group together images from serial crystallography. It is particularly desirable for the differences between lattices to be computed as a perturbation-stable metric, i.e. as distances that satisfy the triangle inequality, so that standard tree-based nearest-neighbor algorithms can be used, and for which small changes in the lattices involved produce small changes in the distances computed. A perturbation-stable metric space related to the reduction algorithm of Selling and to the Bravais lattice determination methods of Delone is described. Two ways of representing the space, as six-dimensional real vectors or equivalently as three-dimensional complex vectors, are presented and applications of these metrics are discussed. (Note: in his later publications, Boris Delaunay used the Russian version of his surname, Delone.) |
format | Online Article Text |
id | pubmed-6492488 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-64924882019-05-03 A space for lattice representation and clustering Andrews, Lawrence C. Bernstein, Herbert J. Sauter, Nicholas K. Acta Crystallogr A Found Adv Research Papers Algorithms for quantifying the differences between two lattices are used for Bravais lattice determination, database lookup for unit cells to select candidates for molecular replacement, and recently for clustering to group together images from serial crystallography. It is particularly desirable for the differences between lattices to be computed as a perturbation-stable metric, i.e. as distances that satisfy the triangle inequality, so that standard tree-based nearest-neighbor algorithms can be used, and for which small changes in the lattices involved produce small changes in the distances computed. A perturbation-stable metric space related to the reduction algorithm of Selling and to the Bravais lattice determination methods of Delone is described. Two ways of representing the space, as six-dimensional real vectors or equivalently as three-dimensional complex vectors, are presented and applications of these metrics are discussed. (Note: in his later publications, Boris Delaunay used the Russian version of his surname, Delone.) International Union of Crystallography 2019-04-30 /pmc/articles/PMC6492488/ /pubmed/31041913 http://dx.doi.org/10.1107/S2053273319002729 Text en © Lawrence C. Andrews et al. 2019 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Andrews, Lawrence C. Bernstein, Herbert J. Sauter, Nicholas K. A space for lattice representation and clustering |
title | A space for lattice representation and clustering |
title_full | A space for lattice representation and clustering |
title_fullStr | A space for lattice representation and clustering |
title_full_unstemmed | A space for lattice representation and clustering |
title_short | A space for lattice representation and clustering |
title_sort | space for lattice representation and clustering |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6492488/ https://www.ncbi.nlm.nih.gov/pubmed/31041913 http://dx.doi.org/10.1107/S2053273319002729 |
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