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Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources
Identifying the source of an outbreak facilitates its control. Spatial methods are not optimally used in outbreak investigation, due to a mix of the complexities involved (e.g., methods requiring additional parameter selection), imperfect performance, and lack of confidence in existing options. We s...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6494671/ https://www.ncbi.nlm.nih.gov/pubmed/30877759 http://dx.doi.org/10.1093/aje/kwy290 |
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author | Chua, Jonathan L Ng, Lee Ching Lee, Vernon J Ong, Marcus E H Lim, Er Luen Lim, Hoon Chin Steven Ooi, Chee Kheong Tyebally, Arif Seow, Eillyne Chen, Mark I-Cheng |
author_facet | Chua, Jonathan L Ng, Lee Ching Lee, Vernon J Ong, Marcus E H Lim, Er Luen Lim, Hoon Chin Steven Ooi, Chee Kheong Tyebally, Arif Seow, Eillyne Chen, Mark I-Cheng |
author_sort | Chua, Jonathan L |
collection | PubMed |
description | Identifying the source of an outbreak facilitates its control. Spatial methods are not optimally used in outbreak investigation, due to a mix of the complexities involved (e.g., methods requiring additional parameter selection), imperfect performance, and lack of confidence in existing options. We simulated 30 mock outbreaks and compared 5 simple methods that do not require parameter selection but could select between mock cases’ residential and workplace addresses to localize the source. Each category of site had a unique spatial distribution; residential and workplace address were visually and statistically clustered around the residential neighborhood and city center sites respectively, suggesting that the value of workplace addresses is tied to the location where an outbreak might originate. A modification to centrographic statistics that we propose—the center of minimum geometric distance with address selection—was able to localize the mock outbreak source to within a 500 m radius in almost all instances when using workplace in combination with residential addresses. In the sensitivity analysis, when given sufficient workplace data, the method performed well in various scenarios with only 10 cases. It was also successful when applied to past outbreaks, except for a multisite outbreak from a common food supplier. |
format | Online Article Text |
id | pubmed-6494671 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-64946712019-05-07 Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources Chua, Jonathan L Ng, Lee Ching Lee, Vernon J Ong, Marcus E H Lim, Er Luen Lim, Hoon Chin Steven Ooi, Chee Kheong Tyebally, Arif Seow, Eillyne Chen, Mark I-Cheng Am J Epidemiol Practice of Epidemiology Identifying the source of an outbreak facilitates its control. Spatial methods are not optimally used in outbreak investigation, due to a mix of the complexities involved (e.g., methods requiring additional parameter selection), imperfect performance, and lack of confidence in existing options. We simulated 30 mock outbreaks and compared 5 simple methods that do not require parameter selection but could select between mock cases’ residential and workplace addresses to localize the source. Each category of site had a unique spatial distribution; residential and workplace address were visually and statistically clustered around the residential neighborhood and city center sites respectively, suggesting that the value of workplace addresses is tied to the location where an outbreak might originate. A modification to centrographic statistics that we propose—the center of minimum geometric distance with address selection—was able to localize the mock outbreak source to within a 500 m radius in almost all instances when using workplace in combination with residential addresses. In the sensitivity analysis, when given sufficient workplace data, the method performed well in various scenarios with only 10 cases. It was also successful when applied to past outbreaks, except for a multisite outbreak from a common food supplier. Oxford University Press 2019-05 2019-03-16 /pmc/articles/PMC6494671/ /pubmed/30877759 http://dx.doi.org/10.1093/aje/kwy290 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. http://creativecommons.org/licenses/by-nc/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journalpermissions@oup.com. |
spellingShingle | Practice of Epidemiology Chua, Jonathan L Ng, Lee Ching Lee, Vernon J Ong, Marcus E H Lim, Er Luen Lim, Hoon Chin Steven Ooi, Chee Kheong Tyebally, Arif Seow, Eillyne Chen, Mark I-Cheng Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources |
title | Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources |
title_full | Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources |
title_fullStr | Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources |
title_full_unstemmed | Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources |
title_short | Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources |
title_sort | utility of spatial point-pattern analysis using residential and workplace geospatial information to localize potential outbreak sources |
topic | Practice of Epidemiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6494671/ https://www.ncbi.nlm.nih.gov/pubmed/30877759 http://dx.doi.org/10.1093/aje/kwy290 |
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