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Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources

Identifying the source of an outbreak facilitates its control. Spatial methods are not optimally used in outbreak investigation, due to a mix of the complexities involved (e.g., methods requiring additional parameter selection), imperfect performance, and lack of confidence in existing options. We s...

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Autores principales: Chua, Jonathan L, Ng, Lee Ching, Lee, Vernon J, Ong, Marcus E H, Lim, Er Luen, Lim, Hoon Chin Steven, Ooi, Chee Kheong, Tyebally, Arif, Seow, Eillyne, Chen, Mark I-Cheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6494671/
https://www.ncbi.nlm.nih.gov/pubmed/30877759
http://dx.doi.org/10.1093/aje/kwy290
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author Chua, Jonathan L
Ng, Lee Ching
Lee, Vernon J
Ong, Marcus E H
Lim, Er Luen
Lim, Hoon Chin Steven
Ooi, Chee Kheong
Tyebally, Arif
Seow, Eillyne
Chen, Mark I-Cheng
author_facet Chua, Jonathan L
Ng, Lee Ching
Lee, Vernon J
Ong, Marcus E H
Lim, Er Luen
Lim, Hoon Chin Steven
Ooi, Chee Kheong
Tyebally, Arif
Seow, Eillyne
Chen, Mark I-Cheng
author_sort Chua, Jonathan L
collection PubMed
description Identifying the source of an outbreak facilitates its control. Spatial methods are not optimally used in outbreak investigation, due to a mix of the complexities involved (e.g., methods requiring additional parameter selection), imperfect performance, and lack of confidence in existing options. We simulated 30 mock outbreaks and compared 5 simple methods that do not require parameter selection but could select between mock cases’ residential and workplace addresses to localize the source. Each category of site had a unique spatial distribution; residential and workplace address were visually and statistically clustered around the residential neighborhood and city center sites respectively, suggesting that the value of workplace addresses is tied to the location where an outbreak might originate. A modification to centrographic statistics that we propose—the center of minimum geometric distance with address selection—was able to localize the mock outbreak source to within a 500 m radius in almost all instances when using workplace in combination with residential addresses. In the sensitivity analysis, when given sufficient workplace data, the method performed well in various scenarios with only 10 cases. It was also successful when applied to past outbreaks, except for a multisite outbreak from a common food supplier.
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spelling pubmed-64946712019-05-07 Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources Chua, Jonathan L Ng, Lee Ching Lee, Vernon J Ong, Marcus E H Lim, Er Luen Lim, Hoon Chin Steven Ooi, Chee Kheong Tyebally, Arif Seow, Eillyne Chen, Mark I-Cheng Am J Epidemiol Practice of Epidemiology Identifying the source of an outbreak facilitates its control. Spatial methods are not optimally used in outbreak investigation, due to a mix of the complexities involved (e.g., methods requiring additional parameter selection), imperfect performance, and lack of confidence in existing options. We simulated 30 mock outbreaks and compared 5 simple methods that do not require parameter selection but could select between mock cases’ residential and workplace addresses to localize the source. Each category of site had a unique spatial distribution; residential and workplace address were visually and statistically clustered around the residential neighborhood and city center sites respectively, suggesting that the value of workplace addresses is tied to the location where an outbreak might originate. A modification to centrographic statistics that we propose—the center of minimum geometric distance with address selection—was able to localize the mock outbreak source to within a 500 m radius in almost all instances when using workplace in combination with residential addresses. In the sensitivity analysis, when given sufficient workplace data, the method performed well in various scenarios with only 10 cases. It was also successful when applied to past outbreaks, except for a multisite outbreak from a common food supplier. Oxford University Press 2019-05 2019-03-16 /pmc/articles/PMC6494671/ /pubmed/30877759 http://dx.doi.org/10.1093/aje/kwy290 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. http://creativecommons.org/licenses/by-nc/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journalpermissions@oup.com.
spellingShingle Practice of Epidemiology
Chua, Jonathan L
Ng, Lee Ching
Lee, Vernon J
Ong, Marcus E H
Lim, Er Luen
Lim, Hoon Chin Steven
Ooi, Chee Kheong
Tyebally, Arif
Seow, Eillyne
Chen, Mark I-Cheng
Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources
title Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources
title_full Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources
title_fullStr Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources
title_full_unstemmed Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources
title_short Utility of Spatial Point-Pattern Analysis Using Residential and Workplace Geospatial Information to Localize Potential Outbreak Sources
title_sort utility of spatial point-pattern analysis using residential and workplace geospatial information to localize potential outbreak sources
topic Practice of Epidemiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6494671/
https://www.ncbi.nlm.nih.gov/pubmed/30877759
http://dx.doi.org/10.1093/aje/kwy290
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