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Electrocardiogram generation with a bidirectional LSTM-CNN generative adversarial network

Heart disease is a malignant threat to human health. Electrocardiogram (ECG) tests are used to help diagnose heart disease by recording the heart’s activity. However, automated medical-aided diagnosis with computers usually requires a large volume of labeled clinical data without patients' priv...

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Autores principales: Zhu, Fei, Ye, Fei, Fu, Yuchen, Liu, Quan, Shen, Bairong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6494992/
https://www.ncbi.nlm.nih.gov/pubmed/31043666
http://dx.doi.org/10.1038/s41598-019-42516-z
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author Zhu, Fei
Ye, Fei
Fu, Yuchen
Liu, Quan
Shen, Bairong
author_facet Zhu, Fei
Ye, Fei
Fu, Yuchen
Liu, Quan
Shen, Bairong
author_sort Zhu, Fei
collection PubMed
description Heart disease is a malignant threat to human health. Electrocardiogram (ECG) tests are used to help diagnose heart disease by recording the heart’s activity. However, automated medical-aided diagnosis with computers usually requires a large volume of labeled clinical data without patients' privacy to train the model, which is an empirical problem that still needs to be solved. To address this problem, we propose a generative adversarial network (GAN), which is composed of a bidirectional long short-term memory(LSTM) and convolutional neural network(CNN), referred as BiLSTM-CNN,to generate synthetic ECG data that agree with existing clinical data so that the features of patients with heart disease can be retained. The model includes a generator and a discriminator, where the generator employs the two layers of the BiLSTM networks and the discriminator is based on convolutional neural networks. The 48 ECG records from individuals of the MIT-BIH database were used to train the model. We compared the performance of our model with two other generative models, the recurrent neural network autoencoder(RNN-AE) and the recurrent neural network variational autoencoder (RNN-VAE). The results showed that the loss function of our model converged to zero the fastest. We also evaluated the loss of the discriminator of GANs with different combinations of generator and discriminator. The results indicated that BiLSTM-CNN GAN could generate ECG data with high morphological similarity to real ECG recordings.
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spelling pubmed-64949922019-05-17 Electrocardiogram generation with a bidirectional LSTM-CNN generative adversarial network Zhu, Fei Ye, Fei Fu, Yuchen Liu, Quan Shen, Bairong Sci Rep Article Heart disease is a malignant threat to human health. Electrocardiogram (ECG) tests are used to help diagnose heart disease by recording the heart’s activity. However, automated medical-aided diagnosis with computers usually requires a large volume of labeled clinical data without patients' privacy to train the model, which is an empirical problem that still needs to be solved. To address this problem, we propose a generative adversarial network (GAN), which is composed of a bidirectional long short-term memory(LSTM) and convolutional neural network(CNN), referred as BiLSTM-CNN,to generate synthetic ECG data that agree with existing clinical data so that the features of patients with heart disease can be retained. The model includes a generator and a discriminator, where the generator employs the two layers of the BiLSTM networks and the discriminator is based on convolutional neural networks. The 48 ECG records from individuals of the MIT-BIH database were used to train the model. We compared the performance of our model with two other generative models, the recurrent neural network autoencoder(RNN-AE) and the recurrent neural network variational autoencoder (RNN-VAE). The results showed that the loss function of our model converged to zero the fastest. We also evaluated the loss of the discriminator of GANs with different combinations of generator and discriminator. The results indicated that BiLSTM-CNN GAN could generate ECG data with high morphological similarity to real ECG recordings. Nature Publishing Group UK 2019-05-01 /pmc/articles/PMC6494992/ /pubmed/31043666 http://dx.doi.org/10.1038/s41598-019-42516-z Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Zhu, Fei
Ye, Fei
Fu, Yuchen
Liu, Quan
Shen, Bairong
Electrocardiogram generation with a bidirectional LSTM-CNN generative adversarial network
title Electrocardiogram generation with a bidirectional LSTM-CNN generative adversarial network
title_full Electrocardiogram generation with a bidirectional LSTM-CNN generative adversarial network
title_fullStr Electrocardiogram generation with a bidirectional LSTM-CNN generative adversarial network
title_full_unstemmed Electrocardiogram generation with a bidirectional LSTM-CNN generative adversarial network
title_short Electrocardiogram generation with a bidirectional LSTM-CNN generative adversarial network
title_sort electrocardiogram generation with a bidirectional lstm-cnn generative adversarial network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6494992/
https://www.ncbi.nlm.nih.gov/pubmed/31043666
http://dx.doi.org/10.1038/s41598-019-42516-z
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