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Deep Learning Spectroscopy: Neural Networks for Molecular Excitation Spectra

Deep learning methods for the prediction of molecular excitation spectra are presented. For the example of the electronic density of states of 132k organic molecules, three different neural network architectures: multilayer perceptron (MLP), convolutional neural network (CNN), and deep tensor neural...

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Detalles Bibliográficos
Autores principales: Ghosh, Kunal, Stuke, Annika, Todorović, Milica, Jørgensen, Peter Bjørn, Schmidt, Mikkel N., Vehtari, Aki, Rinke, Patrick
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6498126/
https://www.ncbi.nlm.nih.gov/pubmed/31065514
http://dx.doi.org/10.1002/advs.201801367
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author Ghosh, Kunal
Stuke, Annika
Todorović, Milica
Jørgensen, Peter Bjørn
Schmidt, Mikkel N.
Vehtari, Aki
Rinke, Patrick
author_facet Ghosh, Kunal
Stuke, Annika
Todorović, Milica
Jørgensen, Peter Bjørn
Schmidt, Mikkel N.
Vehtari, Aki
Rinke, Patrick
author_sort Ghosh, Kunal
collection PubMed
description Deep learning methods for the prediction of molecular excitation spectra are presented. For the example of the electronic density of states of 132k organic molecules, three different neural network architectures: multilayer perceptron (MLP), convolutional neural network (CNN), and deep tensor neural network (DTNN) are trained and assessed. The inputs for the neural networks are the coordinates and charges of the constituent atoms of each molecule. Already, the MLP is able to learn spectra, but the root mean square error (RMSE) is still as high as 0.3 eV. The learning quality improves significantly for the CNN (RMSE = 0.23 eV) and reaches its best performance for the DTNN (RMSE = 0.19 eV). Both CNN and DTNN capture even small nuances in the spectral shape. In a showcase application of this method, the structures of 10k previously unseen organic molecules are scanned and instant spectra predictions are obtained to identify molecules for potential applications.
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spelling pubmed-64981262019-05-07 Deep Learning Spectroscopy: Neural Networks for Molecular Excitation Spectra Ghosh, Kunal Stuke, Annika Todorović, Milica Jørgensen, Peter Bjørn Schmidt, Mikkel N. Vehtari, Aki Rinke, Patrick Adv Sci (Weinh) Full Papers Deep learning methods for the prediction of molecular excitation spectra are presented. For the example of the electronic density of states of 132k organic molecules, three different neural network architectures: multilayer perceptron (MLP), convolutional neural network (CNN), and deep tensor neural network (DTNN) are trained and assessed. The inputs for the neural networks are the coordinates and charges of the constituent atoms of each molecule. Already, the MLP is able to learn spectra, but the root mean square error (RMSE) is still as high as 0.3 eV. The learning quality improves significantly for the CNN (RMSE = 0.23 eV) and reaches its best performance for the DTNN (RMSE = 0.19 eV). Both CNN and DTNN capture even small nuances in the spectral shape. In a showcase application of this method, the structures of 10k previously unseen organic molecules are scanned and instant spectra predictions are obtained to identify molecules for potential applications. John Wiley and Sons Inc. 2019-01-29 /pmc/articles/PMC6498126/ /pubmed/31065514 http://dx.doi.org/10.1002/advs.201801367 Text en © 2019 The Authors. Published by WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Full Papers
Ghosh, Kunal
Stuke, Annika
Todorović, Milica
Jørgensen, Peter Bjørn
Schmidt, Mikkel N.
Vehtari, Aki
Rinke, Patrick
Deep Learning Spectroscopy: Neural Networks for Molecular Excitation Spectra
title Deep Learning Spectroscopy: Neural Networks for Molecular Excitation Spectra
title_full Deep Learning Spectroscopy: Neural Networks for Molecular Excitation Spectra
title_fullStr Deep Learning Spectroscopy: Neural Networks for Molecular Excitation Spectra
title_full_unstemmed Deep Learning Spectroscopy: Neural Networks for Molecular Excitation Spectra
title_short Deep Learning Spectroscopy: Neural Networks for Molecular Excitation Spectra
title_sort deep learning spectroscopy: neural networks for molecular excitation spectra
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6498126/
https://www.ncbi.nlm.nih.gov/pubmed/31065514
http://dx.doi.org/10.1002/advs.201801367
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