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Curating Scientific Workflows for Biomolecular Nuclear Magnetic Resonance Spectroscopy
This paper describes our recent and ongoing efforts for enhancing the curation of scientific workflows to improve reproducibility and reusability of biomolecular nuclear magnetic resonance (bioNMR) data. Our efforts have focused on both developing a workflow management system, called CONNJUR Workflo...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6499392/ https://www.ncbi.nlm.nih.gov/pubmed/31061674 http://dx.doi.org/10.2218/ijdc.v13i1.657 |
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author | Heintz, Douglas Gryk, Michael R. |
author_facet | Heintz, Douglas Gryk, Michael R. |
author_sort | Heintz, Douglas |
collection | PubMed |
description | This paper describes our recent and ongoing efforts for enhancing the curation of scientific workflows to improve reproducibility and reusability of biomolecular nuclear magnetic resonance (bioNMR) data. Our efforts have focused on both developing a workflow management system, called CONNJUR Workflow Builder (CWB), as well as refactoring our workflow data model to make use of the PREMIS model for digital preservation. This revised workflow management system will be available through the NMRbox cloud-computing platform for bioNMR. In addition, we are implementing a new file structure which bundles the original binary data files along with PREMIS XML records describing the provenance of the data. These are packaged together using a standardized file archive utility. In this manner, the provenance and data curation information is maintained together along with the scientific data. The benefits and limitations of these approaches as well as future directions are discussed. |
format | Online Article Text |
id | pubmed-6499392 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
record_format | MEDLINE/PubMed |
spelling | pubmed-64993922019-07-19 Curating Scientific Workflows for Biomolecular Nuclear Magnetic Resonance Spectroscopy Heintz, Douglas Gryk, Michael R. Int J Digit Curation Article This paper describes our recent and ongoing efforts for enhancing the curation of scientific workflows to improve reproducibility and reusability of biomolecular nuclear magnetic resonance (bioNMR) data. Our efforts have focused on both developing a workflow management system, called CONNJUR Workflow Builder (CWB), as well as refactoring our workflow data model to make use of the PREMIS model for digital preservation. This revised workflow management system will be available through the NMRbox cloud-computing platform for bioNMR. In addition, we are implementing a new file structure which bundles the original binary data files along with PREMIS XML records describing the provenance of the data. These are packaged together using a standardized file archive utility. In this manner, the provenance and data curation information is maintained together along with the scientific data. The benefits and limitations of these approaches as well as future directions are discussed. 2019-04-19 2018 /pmc/articles/PMC6499392/ /pubmed/31061674 http://dx.doi.org/10.2218/ijdc.v13i1.657 Text en This work is released under a Creative Commons Attribution 4.0 International Licence. For details please see http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Heintz, Douglas Gryk, Michael R. Curating Scientific Workflows for Biomolecular Nuclear Magnetic Resonance Spectroscopy |
title | Curating Scientific Workflows for Biomolecular Nuclear Magnetic Resonance Spectroscopy |
title_full | Curating Scientific Workflows for Biomolecular Nuclear Magnetic Resonance Spectroscopy |
title_fullStr | Curating Scientific Workflows for Biomolecular Nuclear Magnetic Resonance Spectroscopy |
title_full_unstemmed | Curating Scientific Workflows for Biomolecular Nuclear Magnetic Resonance Spectroscopy |
title_short | Curating Scientific Workflows for Biomolecular Nuclear Magnetic Resonance Spectroscopy |
title_sort | curating scientific workflows for biomolecular nuclear magnetic resonance spectroscopy |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6499392/ https://www.ncbi.nlm.nih.gov/pubmed/31061674 http://dx.doi.org/10.2218/ijdc.v13i1.657 |
work_keys_str_mv | AT heintzdouglas curatingscientificworkflowsforbiomolecularnuclearmagneticresonancespectroscopy AT grykmichaelr curatingscientificworkflowsforbiomolecularnuclearmagneticresonancespectroscopy |