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Deep convolutional models improve predictions of macaque V1 responses to natural images

Despite great efforts over several decades, our best models of primary visual cortex (V1) still predict spiking activity quite poorly when probed with natural stimuli, highlighting our limited understanding of the nonlinear computations in V1. Recently, two approaches based on deep learning have eme...

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Autores principales: Cadena, Santiago A., Denfield, George H., Walker, Edgar Y., Gatys, Leon A., Tolias, Andreas S., Bethge, Matthias, Ecker, Alexander S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6499433/
https://www.ncbi.nlm.nih.gov/pubmed/31013278
http://dx.doi.org/10.1371/journal.pcbi.1006897
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author Cadena, Santiago A.
Denfield, George H.
Walker, Edgar Y.
Gatys, Leon A.
Tolias, Andreas S.
Bethge, Matthias
Ecker, Alexander S.
author_facet Cadena, Santiago A.
Denfield, George H.
Walker, Edgar Y.
Gatys, Leon A.
Tolias, Andreas S.
Bethge, Matthias
Ecker, Alexander S.
author_sort Cadena, Santiago A.
collection PubMed
description Despite great efforts over several decades, our best models of primary visual cortex (V1) still predict spiking activity quite poorly when probed with natural stimuli, highlighting our limited understanding of the nonlinear computations in V1. Recently, two approaches based on deep learning have emerged for modeling these nonlinear computations: transfer learning from artificial neural networks trained on object recognition and data-driven convolutional neural network models trained end-to-end on large populations of neurons. Here, we test the ability of both approaches to predict spiking activity in response to natural images in V1 of awake monkeys. We found that the transfer learning approach performed similarly well to the data-driven approach and both outperformed classical linear-nonlinear and wavelet-based feature representations that build on existing theories of V1. Notably, transfer learning using a pre-trained feature space required substantially less experimental time to achieve the same performance. In conclusion, multi-layer convolutional neural networks (CNNs) set the new state of the art for predicting neural responses to natural images in primate V1 and deep features learned for object recognition are better explanations for V1 computation than all previous filter bank theories. This finding strengthens the necessity of V1 models that are multiple nonlinearities away from the image domain and it supports the idea of explaining early visual cortex based on high-level functional goals.
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spelling pubmed-64994332019-05-17 Deep convolutional models improve predictions of macaque V1 responses to natural images Cadena, Santiago A. Denfield, George H. Walker, Edgar Y. Gatys, Leon A. Tolias, Andreas S. Bethge, Matthias Ecker, Alexander S. PLoS Comput Biol Research Article Despite great efforts over several decades, our best models of primary visual cortex (V1) still predict spiking activity quite poorly when probed with natural stimuli, highlighting our limited understanding of the nonlinear computations in V1. Recently, two approaches based on deep learning have emerged for modeling these nonlinear computations: transfer learning from artificial neural networks trained on object recognition and data-driven convolutional neural network models trained end-to-end on large populations of neurons. Here, we test the ability of both approaches to predict spiking activity in response to natural images in V1 of awake monkeys. We found that the transfer learning approach performed similarly well to the data-driven approach and both outperformed classical linear-nonlinear and wavelet-based feature representations that build on existing theories of V1. Notably, transfer learning using a pre-trained feature space required substantially less experimental time to achieve the same performance. In conclusion, multi-layer convolutional neural networks (CNNs) set the new state of the art for predicting neural responses to natural images in primate V1 and deep features learned for object recognition are better explanations for V1 computation than all previous filter bank theories. This finding strengthens the necessity of V1 models that are multiple nonlinearities away from the image domain and it supports the idea of explaining early visual cortex based on high-level functional goals. Public Library of Science 2019-04-23 /pmc/articles/PMC6499433/ /pubmed/31013278 http://dx.doi.org/10.1371/journal.pcbi.1006897 Text en © 2019 Cadena et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Cadena, Santiago A.
Denfield, George H.
Walker, Edgar Y.
Gatys, Leon A.
Tolias, Andreas S.
Bethge, Matthias
Ecker, Alexander S.
Deep convolutional models improve predictions of macaque V1 responses to natural images
title Deep convolutional models improve predictions of macaque V1 responses to natural images
title_full Deep convolutional models improve predictions of macaque V1 responses to natural images
title_fullStr Deep convolutional models improve predictions of macaque V1 responses to natural images
title_full_unstemmed Deep convolutional models improve predictions of macaque V1 responses to natural images
title_short Deep convolutional models improve predictions of macaque V1 responses to natural images
title_sort deep convolutional models improve predictions of macaque v1 responses to natural images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6499433/
https://www.ncbi.nlm.nih.gov/pubmed/31013278
http://dx.doi.org/10.1371/journal.pcbi.1006897
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