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Methylation at cg05575921 of a smoking-related gene (AHRR) in non-smoking Taiwanese adults residing in areas with different PM(2.5) concentrations

BACKGROUND: DNA methylation is associated with cancer, metabolic, neurological, and autoimmune disorders. Hypomethylation of aryl hydrocarbon receptor repressor (AHRR) especially at cg05575921 is associated with smoking and lung cancer. Studies on the association between AHRR methylation at cg055759...

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Autores principales: Tantoh, Disline Manli, Lee, Kuan-Jung, Nfor, Oswald Ndi, Liaw, Yi-Chia, Lin, Chin, Chu, Hou-Wei, Chen, Pei-Hsin, Hsu, Shu-Yi, Liu, Wen-Hsiu, Ho, Chen-Chang, Lung, Chia-Chi, Wu, Ming-Fang, Liaw, Yi-Ching, Debnath, Tonmoy, Liaw, Yung-Po
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6503351/
https://www.ncbi.nlm.nih.gov/pubmed/31060609
http://dx.doi.org/10.1186/s13148-019-0662-9
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author Tantoh, Disline Manli
Lee, Kuan-Jung
Nfor, Oswald Ndi
Liaw, Yi-Chia
Lin, Chin
Chu, Hou-Wei
Chen, Pei-Hsin
Hsu, Shu-Yi
Liu, Wen-Hsiu
Ho, Chen-Chang
Lung, Chia-Chi
Wu, Ming-Fang
Liaw, Yi-Ching
Debnath, Tonmoy
Liaw, Yung-Po
author_facet Tantoh, Disline Manli
Lee, Kuan-Jung
Nfor, Oswald Ndi
Liaw, Yi-Chia
Lin, Chin
Chu, Hou-Wei
Chen, Pei-Hsin
Hsu, Shu-Yi
Liu, Wen-Hsiu
Ho, Chen-Chang
Lung, Chia-Chi
Wu, Ming-Fang
Liaw, Yi-Ching
Debnath, Tonmoy
Liaw, Yung-Po
author_sort Tantoh, Disline Manli
collection PubMed
description BACKGROUND: DNA methylation is associated with cancer, metabolic, neurological, and autoimmune disorders. Hypomethylation of aryl hydrocarbon receptor repressor (AHRR) especially at cg05575921 is associated with smoking and lung cancer. Studies on the association between AHRR methylation at cg05575921 and sources of polycyclic aromatic hydrocarbon (PAH) other than smoking are limited. The aim of our study was to assess the pattern of blood DNA methylation at cg05575921 in non-smoking Taiwanese adults living in areas with different PM(2.5) levels. METHODS: Data on blood DNA methylation, smoking, and residence were retrieved from the Taiwan Biobank dataset (2008–2015). Current and former smokers, as well as individuals with incomplete information were excluded from the current study. The final analysis included 708 participants (279 men and 429 women) aged 30–70 years. PM(2.5) levels have been shown to increase as one moves from the northern through central towards southern Taiwan. Based on this trend, the study areas were categorized into northern, north-central, central, and southern regions. RESULTS: Living in PM(2.5) areas was associated with lower methylation levels: compared with the northern area (reference area), living in north-central, central, and southern areas was associated with lower methylation levels at cg05575921. However, only methylation levels in those living in central and southern areas were significant (β = − 0.01003, P = 0.009 and β = − 0.01480, P < 0.001, respectively. Even though methylation levels in those living in the north-central area were not statistically significant, the test for linear trend was significant (P < 0.001). When PM(2.5) was included in the regression model, a unit increase in PM(2.5) was associated with 0.00115 (P < 0.001) lower cg05575921 methylation levels. CONCLUSION: Living in PM(2.5) areas was inversely associated with blood AHRR methylation levels at cg05575921. The methylation levels were lowest in participants residing in southern followed by central and north-central areas. Moreover, when PM(2.5) was included in the regression model, it was inversely associated with methylation levels at cg05575921. Blood methylation at cg05575921 (AHRR) in non-smokers might indicate different exposures to PM(2.5) and lung cancer which is a PM(2.5)-related disease. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13148-019-0662-9) contains supplementary material, which is available to authorized users.
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spelling pubmed-65033512019-05-10 Methylation at cg05575921 of a smoking-related gene (AHRR) in non-smoking Taiwanese adults residing in areas with different PM(2.5) concentrations Tantoh, Disline Manli Lee, Kuan-Jung Nfor, Oswald Ndi Liaw, Yi-Chia Lin, Chin Chu, Hou-Wei Chen, Pei-Hsin Hsu, Shu-Yi Liu, Wen-Hsiu Ho, Chen-Chang Lung, Chia-Chi Wu, Ming-Fang Liaw, Yi-Ching Debnath, Tonmoy Liaw, Yung-Po Clin Epigenetics Research BACKGROUND: DNA methylation is associated with cancer, metabolic, neurological, and autoimmune disorders. Hypomethylation of aryl hydrocarbon receptor repressor (AHRR) especially at cg05575921 is associated with smoking and lung cancer. Studies on the association between AHRR methylation at cg05575921 and sources of polycyclic aromatic hydrocarbon (PAH) other than smoking are limited. The aim of our study was to assess the pattern of blood DNA methylation at cg05575921 in non-smoking Taiwanese adults living in areas with different PM(2.5) levels. METHODS: Data on blood DNA methylation, smoking, and residence were retrieved from the Taiwan Biobank dataset (2008–2015). Current and former smokers, as well as individuals with incomplete information were excluded from the current study. The final analysis included 708 participants (279 men and 429 women) aged 30–70 years. PM(2.5) levels have been shown to increase as one moves from the northern through central towards southern Taiwan. Based on this trend, the study areas were categorized into northern, north-central, central, and southern regions. RESULTS: Living in PM(2.5) areas was associated with lower methylation levels: compared with the northern area (reference area), living in north-central, central, and southern areas was associated with lower methylation levels at cg05575921. However, only methylation levels in those living in central and southern areas were significant (β = − 0.01003, P = 0.009 and β = − 0.01480, P < 0.001, respectively. Even though methylation levels in those living in the north-central area were not statistically significant, the test for linear trend was significant (P < 0.001). When PM(2.5) was included in the regression model, a unit increase in PM(2.5) was associated with 0.00115 (P < 0.001) lower cg05575921 methylation levels. CONCLUSION: Living in PM(2.5) areas was inversely associated with blood AHRR methylation levels at cg05575921. The methylation levels were lowest in participants residing in southern followed by central and north-central areas. Moreover, when PM(2.5) was included in the regression model, it was inversely associated with methylation levels at cg05575921. Blood methylation at cg05575921 (AHRR) in non-smokers might indicate different exposures to PM(2.5) and lung cancer which is a PM(2.5)-related disease. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s13148-019-0662-9) contains supplementary material, which is available to authorized users. BioMed Central 2019-05-06 /pmc/articles/PMC6503351/ /pubmed/31060609 http://dx.doi.org/10.1186/s13148-019-0662-9 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Tantoh, Disline Manli
Lee, Kuan-Jung
Nfor, Oswald Ndi
Liaw, Yi-Chia
Lin, Chin
Chu, Hou-Wei
Chen, Pei-Hsin
Hsu, Shu-Yi
Liu, Wen-Hsiu
Ho, Chen-Chang
Lung, Chia-Chi
Wu, Ming-Fang
Liaw, Yi-Ching
Debnath, Tonmoy
Liaw, Yung-Po
Methylation at cg05575921 of a smoking-related gene (AHRR) in non-smoking Taiwanese adults residing in areas with different PM(2.5) concentrations
title Methylation at cg05575921 of a smoking-related gene (AHRR) in non-smoking Taiwanese adults residing in areas with different PM(2.5) concentrations
title_full Methylation at cg05575921 of a smoking-related gene (AHRR) in non-smoking Taiwanese adults residing in areas with different PM(2.5) concentrations
title_fullStr Methylation at cg05575921 of a smoking-related gene (AHRR) in non-smoking Taiwanese adults residing in areas with different PM(2.5) concentrations
title_full_unstemmed Methylation at cg05575921 of a smoking-related gene (AHRR) in non-smoking Taiwanese adults residing in areas with different PM(2.5) concentrations
title_short Methylation at cg05575921 of a smoking-related gene (AHRR) in non-smoking Taiwanese adults residing in areas with different PM(2.5) concentrations
title_sort methylation at cg05575921 of a smoking-related gene (ahrr) in non-smoking taiwanese adults residing in areas with different pm(2.5) concentrations
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6503351/
https://www.ncbi.nlm.nih.gov/pubmed/31060609
http://dx.doi.org/10.1186/s13148-019-0662-9
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