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Application of Convolutional Recurrent Neural Network for Individual Recognition Based on Resting State fMRI Data

In most task and resting state fMRI studies, a group consensus is often sought, where individual variability is considered a nuisance. None the less, biological variability is an important factor that cannot be ignored and is gaining more attention in the field. One recent development is the individ...

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Detalles Bibliográficos
Autores principales: Wang, Lebo, Li, Kaiming, Chen, Xu, Hu, Xiaoping P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6504790/
https://www.ncbi.nlm.nih.gov/pubmed/31118882
http://dx.doi.org/10.3389/fnins.2019.00434
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author Wang, Lebo
Li, Kaiming
Chen, Xu
Hu, Xiaoping P.
author_facet Wang, Lebo
Li, Kaiming
Chen, Xu
Hu, Xiaoping P.
author_sort Wang, Lebo
collection PubMed
description In most task and resting state fMRI studies, a group consensus is often sought, where individual variability is considered a nuisance. None the less, biological variability is an important factor that cannot be ignored and is gaining more attention in the field. One recent development is the individual identification based on static functional connectome. While the original work was based on the static connectome, subsequent efforts using recurrent neural networks (RNN) demonstrated that the inclusion of temporal features greatly improved identification accuracy. Given that convolutional RNN (ConvRNN) seamlessly integrates spatial and temporal features, the present work applied ConvRNN for individual identification with resting state fMRI data. Our result demonstrates ConvRNN achieving a higher identification accuracy than conventional RNN, likely due to better extraction of local features between neighboring ROIs. Furthermore, given that each convolutional output assembles in-place features, they provide a natural way for us to visualize the informative spatial pattern and temporal information, opening up a promising new avenue for analyzing fMRI data.
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spelling pubmed-65047902019-05-22 Application of Convolutional Recurrent Neural Network for Individual Recognition Based on Resting State fMRI Data Wang, Lebo Li, Kaiming Chen, Xu Hu, Xiaoping P. Front Neurosci Neuroscience In most task and resting state fMRI studies, a group consensus is often sought, where individual variability is considered a nuisance. None the less, biological variability is an important factor that cannot be ignored and is gaining more attention in the field. One recent development is the individual identification based on static functional connectome. While the original work was based on the static connectome, subsequent efforts using recurrent neural networks (RNN) demonstrated that the inclusion of temporal features greatly improved identification accuracy. Given that convolutional RNN (ConvRNN) seamlessly integrates spatial and temporal features, the present work applied ConvRNN for individual identification with resting state fMRI data. Our result demonstrates ConvRNN achieving a higher identification accuracy than conventional RNN, likely due to better extraction of local features between neighboring ROIs. Furthermore, given that each convolutional output assembles in-place features, they provide a natural way for us to visualize the informative spatial pattern and temporal information, opening up a promising new avenue for analyzing fMRI data. Frontiers Media S.A. 2019-05-01 /pmc/articles/PMC6504790/ /pubmed/31118882 http://dx.doi.org/10.3389/fnins.2019.00434 Text en Copyright © 2019 Wang, Li, Chen and Hu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Wang, Lebo
Li, Kaiming
Chen, Xu
Hu, Xiaoping P.
Application of Convolutional Recurrent Neural Network for Individual Recognition Based on Resting State fMRI Data
title Application of Convolutional Recurrent Neural Network for Individual Recognition Based on Resting State fMRI Data
title_full Application of Convolutional Recurrent Neural Network for Individual Recognition Based on Resting State fMRI Data
title_fullStr Application of Convolutional Recurrent Neural Network for Individual Recognition Based on Resting State fMRI Data
title_full_unstemmed Application of Convolutional Recurrent Neural Network for Individual Recognition Based on Resting State fMRI Data
title_short Application of Convolutional Recurrent Neural Network for Individual Recognition Based on Resting State fMRI Data
title_sort application of convolutional recurrent neural network for individual recognition based on resting state fmri data
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6504790/
https://www.ncbi.nlm.nih.gov/pubmed/31118882
http://dx.doi.org/10.3389/fnins.2019.00434
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