Cargando…

Determinants of QTL Mapping Power in the Realized Collaborative Cross

The Collaborative Cross (CC) is a mouse genetic reference population whose range of applications includes quantitative trait loci (QTL) mapping. The design of a CC QTL mapping study involves multiple decisions, including which and how many strains to use, and how many replicates per strain to phenot...

Descripción completa

Detalles Bibliográficos
Autores principales:	Keele, Gregory R., Crouse, Wesley L., Kelada, Samir N. P., Valdar, William
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Genetics Society of America 2019
Materias:	Multiparental Populations
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6505132/ https://www.ncbi.nlm.nih.gov/pubmed/30914424 http://dx.doi.org/10.1534/g3.119.400194

Ejemplares similares

Which mouse multiparental population is right for your study? The Collaborative Cross inbred strains, their F1 hybrids, or the Diversity Outbred population
por: Keele, Gregory R
Publicado: (2023)

Inbred Strain Variant Database (ISVdb): A Repository for Probabilistically Informed Sequence Differences Among the Collaborative Cross Strains and Their Founders
por: Oreper, Daniel, et al.
Publicado: (2017)

A Diallel of the Mouse Collaborative Cross Founders Reveals Strong Strain-Specific Maternal Effects on Litter Size
por: Shorter, John R., et al.
Publicado: (2019)

Multiparental Mapping of Plant Height and Flowering Time QTL in Partially Isogenic Sorghum Families
por: Higgins, R. H., et al.
Publicado: (2014)

Bayesian Modeling of Haplotype Effects in Multiparent Populations
por: Zhang, Zhaojun, et al.
Publicado: (2014)

Genomes of the Mouse Collaborative Cross
por: Srivastava, Anuj, et al.
Publicado: (2017)

Identification of Nitrogen Consumption Genetic Variants in Yeast Through QTL Mapping and Bulk Segregant RNA-Seq Analyses
por: Cubillos, Francisco A., et al.
Publicado: (2017)

Quantitative Trait Locus Mapping Methods for Diversity Outbred Mice
por: Gatti, Daniel M., et al.
Publicado: (2014)

Bayesian Diallel Analysis Reveals Mx1-Dependent and Mx1-Independent Effects on Response to Influenza A Virus in Mice
por: Maurizio, Paul L., et al.
Publicado: (2017)

Whole-Genome Analysis of Multienvironment or Multitrait QTL in MAGIC
por: Verbyla, Arūnas P., et al.
Publicado: (2014)

Testing Pleiotropy vs. Separate QTL in Multiparental Populations
por: Boehm, Frederick J., et al.
Publicado: (2019)

Dissecting the Genetic Architecture of Shoot Growth in Carrot (Daucus carota L.) Using a Diallel Mating Design
por: Turner, Sarah D., et al.
Publicado: (2017)

Rapid Identification of Major-Effect Genes Using the Collaborative Cross
por: Ram, Ramesh, et al.
Publicado: (2014)

Antipsychotic Behavioral Phenotypes in the Mouse Collaborative Cross Recombinant Inbred Inter-Crosses (RIX)
por: Giusti-Rodríguez, Paola, et al.
Publicado: (2020)

Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.)
por: Giraud, Héloïse, et al.
Publicado: (2017)

Whole Genome Sequencing and Progress Toward Full Inbreeding of the Mouse Collaborative Cross Population
por: Shorter, John R., et al.
Publicado: (2019)

Discovery of QTL Alleles for Grain Shape in the Japan-MAGIC Rice Population Using Haplotype Information
por: Ogawa, Daisuke, et al.
Publicado: (2018)

Increased Power To Dissect Adaptive Traits in Global Sorghum Diversity Using a Nested Association Mapping Population
por: Bouchet, Sophie, et al.
Publicado: (2017)

Oas1b-dependent Immune Transcriptional Profiles of West Nile Virus Infection in the Collaborative Cross
por: Green, Richard, et al.
Publicado: (2017)

Pedigree-Based Analysis in a Multiparental Population of Octoploid Strawberry Reveals QTL Alleles Conferring Resistance to Phytophthora cactorum
por: Mangandi, Jozer, et al.
Publicado: (2017)

Joint Analysis of Strain and Parent-of-Origin Effects for Recombinant Inbred Intercrosses Generated from Multiparent Populations with the Collaborative Cross as an Example
por: Liu, Yanyan, et al.
Publicado: (2017)

Genotyping by Sequencing of 393 Sorghum bicolor BTx623 × IS3620C Recombinant Inbred Lines Improves Sensitivity and Resolution of QTL Detection
por: Kong, WenQian, et al.
Publicado: (2018)

A Nested Association Mapping Panel in Arabidopsis thaliana for Mapping and Characterizing Genetic Architecture
por: Brock, Marcus T., et al.
Publicado: (2020)

The Beavis Effect in Next-Generation Mapping Panels in Drosophila melanogaster
por: King, Elizabeth G., et al.
Publicado: (2017)

Genetic Architecture of a Rice Nested Association Mapping Population
por: Fragoso, Christopher A., et al.
Publicado: (2017)

Fine-Mapping the Wheat Snn1 Locus Conferring Sensitivity to the Parastagonospora nodorum Necrotrophic Effector SnTox1 Using an Eight Founder Multiparent Advanced Generation Inter-Cross Population
por: Cockram, James, et al.
Publicado: (2015)

Approaches in Characterizing Genetic Structure and Mapping in a Rice Multiparental Population
por: Raghavan, Chitra, et al.
Publicado: (2017)

Genetic Architecture of Chilling Tolerance in Sorghum Dissected with a Nested Association Mapping Population
por: Marla, Sandeep R., et al.
Publicado: (2019)

Dissecting Adaptive Traits with Nested Association Mapping: Genetic Architecture of Inflorescence Morphology in Sorghum
por: Olatoye, Marcus O., et al.
Publicado: (2020)

Genetic characterization of a Sorghum bicolor multiparent mapping population emphasizing carbon-partitioning dynamics
por: Boatwright, J Lucas, et al.
Publicado: (2021)

High-Resolution Genetic Mapping in the Diversity Outbred Mouse Population Identifies Apobec1 as a Candidate Gene for Atherosclerosis
por: Smallwood, Tangi L., et al.
Publicado: (2014)

The Genetic Architecture of Maize (Zea mays L.) Kernel Weight Determination
por: Prado, Santiago Alvarez, et al.
Publicado: (2014)

Empirical Comparisons of Different Statistical Models To Identify and Validate Kernel Row Number-Associated Variants from Structured Multi-parent Mapping Populations of Maize
por: Yang, Jinliang, et al.
Publicado: (2018)

Epistasis: Searching for Interacting Genetic Variants Using Crosses
por: Ehrenreich, Ian M.
Publicado: (2017)

An Eight-Parent Multiparent Advanced Generation Inter-Cross Population for Winter-Sown Wheat: Creation, Properties, and Validation
por: Mackay, Ian J., et al.
Publicado: (2014)

Epistatic Networks Jointly Influence Phenotypes Related to Metabolic Disease and Gene Expression in Diversity Outbred Mice
por: Tyler, Anna L., et al.
Publicado: (2017)

Genome-Wide Analysis of Grain Yield Stability and Environmental Interactions in a Multiparental Soybean Population
por: Xavier, Alencar, et al.
Publicado: (2017)

Genetic Architecture of Soybean Yield and Agronomic Traits
por: Diers, Brian W., et al.
Publicado: (2018)

Inferring the Allelic Series at QTL in Multiparental Populations
por: Crouse, Wesley L., et al.
Publicado: (2020)

Identification of a Novel Gene for Diabetic Traits in Rats, Mice, and Humans
por: Tsaih, Shirng-Wern, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_vjguaufn6foi40qeo0vejk24o8