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Machine learning to help researchers evaluate biases in clinical trials: a prospective, randomized user study

OBJECTIVE: Assessing risks of bias in randomized controlled trials (RCTs) is an important but laborious task when conducting systematic reviews. RobotReviewer (RR), an open-source machine learning (ML) system, semi-automates bias assessments. We conducted a user study of RobotReviewer, evaluating ti...

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Autores principales: Soboczenski, Frank, Trikalinos, Thomas A., Kuiper, Joël, Bias, Randolph G., Wallace, Byron C., Marshall, Iain J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6505190/
https://www.ncbi.nlm.nih.gov/pubmed/31068178
http://dx.doi.org/10.1186/s12911-019-0814-z
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author Soboczenski, Frank
Trikalinos, Thomas A.
Kuiper, Joël
Bias, Randolph G.
Wallace, Byron C.
Marshall, Iain J.
author_facet Soboczenski, Frank
Trikalinos, Thomas A.
Kuiper, Joël
Bias, Randolph G.
Wallace, Byron C.
Marshall, Iain J.
author_sort Soboczenski, Frank
collection PubMed
description OBJECTIVE: Assessing risks of bias in randomized controlled trials (RCTs) is an important but laborious task when conducting systematic reviews. RobotReviewer (RR), an open-source machine learning (ML) system, semi-automates bias assessments. We conducted a user study of RobotReviewer, evaluating time saved and usability of the tool. MATERIALS AND METHODS: Systematic reviewers applied the Cochrane Risk of Bias tool to four randomly selected RCT articles. Reviewers judged: whether an RCT was at low, or high/unclear risk of bias for each bias domain in the Cochrane tool (Version 1); and highlighted article text justifying their decision. For a random two of the four articles, the process was semi-automated: users were provided with ML-suggested bias judgments and text highlights. Participants could amend the suggestions if necessary. We measured time taken for the task, ML suggestions, usability via the System Usability Scale (SUS) and collected qualitative feedback. RESULTS: For 41 volunteers, semi-automation was quicker than manual assessment (mean 755 vs. 824 s; relative time 0.75, 95% CI 0.62–0.92). Reviewers accepted 301/328 (91%) of the ML Risk of Bias (RoB) judgments, and 202/328 (62%) of text highlights without change. Overall, ML suggested text highlights had a recall of 0.90 (SD 0.14) and precision of 0.87 (SD 0.21) with respect to the users’ final versions. Reviewers assigned the system a mean 77.7 SUS score, corresponding to a rating between “good” and “excellent”. CONCLUSIONS: Semi-automation (where humans validate machine learning suggestions) can improve the efficiency of evidence synthesis. Our system was rated highly usable, and expedited bias assessment of RCTs.
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spelling pubmed-65051902019-05-10 Machine learning to help researchers evaluate biases in clinical trials: a prospective, randomized user study Soboczenski, Frank Trikalinos, Thomas A. Kuiper, Joël Bias, Randolph G. Wallace, Byron C. Marshall, Iain J. BMC Med Inform Decis Mak Research Article OBJECTIVE: Assessing risks of bias in randomized controlled trials (RCTs) is an important but laborious task when conducting systematic reviews. RobotReviewer (RR), an open-source machine learning (ML) system, semi-automates bias assessments. We conducted a user study of RobotReviewer, evaluating time saved and usability of the tool. MATERIALS AND METHODS: Systematic reviewers applied the Cochrane Risk of Bias tool to four randomly selected RCT articles. Reviewers judged: whether an RCT was at low, or high/unclear risk of bias for each bias domain in the Cochrane tool (Version 1); and highlighted article text justifying their decision. For a random two of the four articles, the process was semi-automated: users were provided with ML-suggested bias judgments and text highlights. Participants could amend the suggestions if necessary. We measured time taken for the task, ML suggestions, usability via the System Usability Scale (SUS) and collected qualitative feedback. RESULTS: For 41 volunteers, semi-automation was quicker than manual assessment (mean 755 vs. 824 s; relative time 0.75, 95% CI 0.62–0.92). Reviewers accepted 301/328 (91%) of the ML Risk of Bias (RoB) judgments, and 202/328 (62%) of text highlights without change. Overall, ML suggested text highlights had a recall of 0.90 (SD 0.14) and precision of 0.87 (SD 0.21) with respect to the users’ final versions. Reviewers assigned the system a mean 77.7 SUS score, corresponding to a rating between “good” and “excellent”. CONCLUSIONS: Semi-automation (where humans validate machine learning suggestions) can improve the efficiency of evidence synthesis. Our system was rated highly usable, and expedited bias assessment of RCTs. BioMed Central 2019-05-08 /pmc/articles/PMC6505190/ /pubmed/31068178 http://dx.doi.org/10.1186/s12911-019-0814-z Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Soboczenski, Frank
Trikalinos, Thomas A.
Kuiper, Joël
Bias, Randolph G.
Wallace, Byron C.
Marshall, Iain J.
Machine learning to help researchers evaluate biases in clinical trials: a prospective, randomized user study
title Machine learning to help researchers evaluate biases in clinical trials: a prospective, randomized user study
title_full Machine learning to help researchers evaluate biases in clinical trials: a prospective, randomized user study
title_fullStr Machine learning to help researchers evaluate biases in clinical trials: a prospective, randomized user study
title_full_unstemmed Machine learning to help researchers evaluate biases in clinical trials: a prospective, randomized user study
title_short Machine learning to help researchers evaluate biases in clinical trials: a prospective, randomized user study
title_sort machine learning to help researchers evaluate biases in clinical trials: a prospective, randomized user study
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6505190/
https://www.ncbi.nlm.nih.gov/pubmed/31068178
http://dx.doi.org/10.1186/s12911-019-0814-z
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