Cargando…
pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive
The NCBI Sequence Read Archive (SRA) is the primary archive of next-generation sequencing datasets. SRA makes metadata and raw sequencing data available to the research community to encourage reproducibility and to provide avenues for testing novel hypotheses on publicly available data. However, met...
Autor principal: | Choudhary, Saket |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000 Research Limited
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6505635/ https://www.ncbi.nlm.nih.gov/pubmed/31114675 http://dx.doi.org/10.12688/f1000research.18676.1 |
Ejemplares similares
-
“METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI’s sequence read archive”
por: Quiñones, Mariam, et al.
Publicado: (2020) -
Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive
por: Bernstein, Matthew N., et al.
Publicado: (2020) -
PyOmeroUpload: A Python toolkit for uploading images and metadata to OMERO
por: Hay, Johnny, et al.
Publicado: (2020) -
BLASTPLOT: a PERL module to plot next generation sequencing NCBI-BLAST results
por: Herrera-Galeano, Jesus Enrique, et al.
Publicado: (2014) -
DREAMTools: a Python package for scoring collaborative challenges
por: Cokelaer, Thomas, et al.
Publicado: (2016)