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The statistics of epidemic transitions

Emerging and re-emerging pathogens exhibit very complex dynamics, are hard to model and difficult to predict. Their dynamics might appear intractable. However, new statistical approaches—rooted in dynamical systems and the theory of stochastic processes—have yielded insight into the dynamics of emer...

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Autores principales: Drake, John M., Brett, Tobias S., Chen, Shiyang, Epureanu, Bogdan I., Ferrari, Matthew J., Marty, Éric, Miller, Paige B., O’Dea, Eamon B., O’Regan, Suzanne M., Park, Andrew W., Rohani, Pejman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6505855/
https://www.ncbi.nlm.nih.gov/pubmed/31067217
http://dx.doi.org/10.1371/journal.pcbi.1006917
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author Drake, John M.
Brett, Tobias S.
Chen, Shiyang
Epureanu, Bogdan I.
Ferrari, Matthew J.
Marty, Éric
Miller, Paige B.
O’Dea, Eamon B.
O’Regan, Suzanne M.
Park, Andrew W.
Rohani, Pejman
author_facet Drake, John M.
Brett, Tobias S.
Chen, Shiyang
Epureanu, Bogdan I.
Ferrari, Matthew J.
Marty, Éric
Miller, Paige B.
O’Dea, Eamon B.
O’Regan, Suzanne M.
Park, Andrew W.
Rohani, Pejman
author_sort Drake, John M.
collection PubMed
description Emerging and re-emerging pathogens exhibit very complex dynamics, are hard to model and difficult to predict. Their dynamics might appear intractable. However, new statistical approaches—rooted in dynamical systems and the theory of stochastic processes—have yielded insight into the dynamics of emerging and re-emerging pathogens. We argue that these approaches may lead to new methods for predicting epidemics. This perspective views pathogen emergence and re-emergence as a “critical transition,” and uses the concept of noisy dynamic bifurcation to understand the relationship between the system observables and the distance to this transition. Because the system dynamics exhibit characteristic fluctuations in response to perturbations for a system in the vicinity of a critical point, we propose this information may be harnessed to develop early warning signals. Specifically, the motion of perturbations slows as the system approaches the transition.
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spelling pubmed-65058552019-05-23 The statistics of epidemic transitions Drake, John M. Brett, Tobias S. Chen, Shiyang Epureanu, Bogdan I. Ferrari, Matthew J. Marty, Éric Miller, Paige B. O’Dea, Eamon B. O’Regan, Suzanne M. Park, Andrew W. Rohani, Pejman PLoS Comput Biol Perspective Emerging and re-emerging pathogens exhibit very complex dynamics, are hard to model and difficult to predict. Their dynamics might appear intractable. However, new statistical approaches—rooted in dynamical systems and the theory of stochastic processes—have yielded insight into the dynamics of emerging and re-emerging pathogens. We argue that these approaches may lead to new methods for predicting epidemics. This perspective views pathogen emergence and re-emergence as a “critical transition,” and uses the concept of noisy dynamic bifurcation to understand the relationship between the system observables and the distance to this transition. Because the system dynamics exhibit characteristic fluctuations in response to perturbations for a system in the vicinity of a critical point, we propose this information may be harnessed to develop early warning signals. Specifically, the motion of perturbations slows as the system approaches the transition. Public Library of Science 2019-05-08 /pmc/articles/PMC6505855/ /pubmed/31067217 http://dx.doi.org/10.1371/journal.pcbi.1006917 Text en © 2019 Drake et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Perspective
Drake, John M.
Brett, Tobias S.
Chen, Shiyang
Epureanu, Bogdan I.
Ferrari, Matthew J.
Marty, Éric
Miller, Paige B.
O’Dea, Eamon B.
O’Regan, Suzanne M.
Park, Andrew W.
Rohani, Pejman
The statistics of epidemic transitions
title The statistics of epidemic transitions
title_full The statistics of epidemic transitions
title_fullStr The statistics of epidemic transitions
title_full_unstemmed The statistics of epidemic transitions
title_short The statistics of epidemic transitions
title_sort statistics of epidemic transitions
topic Perspective
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6505855/
https://www.ncbi.nlm.nih.gov/pubmed/31067217
http://dx.doi.org/10.1371/journal.pcbi.1006917
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