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Detection of smoking status from retinal images; a Convolutional Neural Network study

Cardiovascular diseases are directly linked to smoking habits, which has both physiological and anatomical effects on the systemic and retinal circulations, and these changes can be detected with fundus photographs. Here, we aimed to 1- design a Convolutional Neural Network (CNN), using retinal phot...

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Autores principales: Vaghefi, Ehsan, Yang, Song, Hill, Sophie, Humphrey, Gayl, Walker, Natalie, Squirrell, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6509122/
https://www.ncbi.nlm.nih.gov/pubmed/31073220
http://dx.doi.org/10.1038/s41598-019-43670-0
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author Vaghefi, Ehsan
Yang, Song
Hill, Sophie
Humphrey, Gayl
Walker, Natalie
Squirrell, David
author_facet Vaghefi, Ehsan
Yang, Song
Hill, Sophie
Humphrey, Gayl
Walker, Natalie
Squirrell, David
author_sort Vaghefi, Ehsan
collection PubMed
description Cardiovascular diseases are directly linked to smoking habits, which has both physiological and anatomical effects on the systemic and retinal circulations, and these changes can be detected with fundus photographs. Here, we aimed to 1- design a Convolutional Neural Network (CNN), using retinal photographs, to differentiate between smokers and non-smokers; and 2- use the attention maps to better understand the physiological changes that occur in the retina in smokers. 165,104 retinal images were obtained from a diabetes screening programme, labelled with self-reported “smoking” or “non-smoking” status. The images were pre-processed in one of two ways, either “contrast-enhanced” or “skeletonized”. Experiments were run on an Intel Xeon Gold 6128 CPU @ 3.40 GHz with 16 GB of RAM memory and a NVIDIA GeForce TiTan V VOLTA 12 GB, for 20 epochs. The dataset was split 80/20 for training and testing sets, respectively. The overall validation outcomes for the contrast-enhanced model were accuracy 88.88%, specificity 93.87%. In contrast, the outcomes of the skeletonized model were accuracy 63.63%, specificity 65.60%. The “attention maps” that were generated of the contrast-enhanced model highlighted the retinal vasculature, perivascular region and the fovea most prominently. We trained a customized CNN to accurately determine smoking status. The retinal vasculature, the perivascular region and the fovea appear to be important predictive features in the determination of smoking status. Despite a high degree of accuracy, the sensitivity of our CNN was low. Further research is required to establish whether the frequency, duration, and dosage (quantity) of smoking would improve the sensitivity of the CNN.
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spelling pubmed-65091222019-05-22 Detection of smoking status from retinal images; a Convolutional Neural Network study Vaghefi, Ehsan Yang, Song Hill, Sophie Humphrey, Gayl Walker, Natalie Squirrell, David Sci Rep Article Cardiovascular diseases are directly linked to smoking habits, which has both physiological and anatomical effects on the systemic and retinal circulations, and these changes can be detected with fundus photographs. Here, we aimed to 1- design a Convolutional Neural Network (CNN), using retinal photographs, to differentiate between smokers and non-smokers; and 2- use the attention maps to better understand the physiological changes that occur in the retina in smokers. 165,104 retinal images were obtained from a diabetes screening programme, labelled with self-reported “smoking” or “non-smoking” status. The images were pre-processed in one of two ways, either “contrast-enhanced” or “skeletonized”. Experiments were run on an Intel Xeon Gold 6128 CPU @ 3.40 GHz with 16 GB of RAM memory and a NVIDIA GeForce TiTan V VOLTA 12 GB, for 20 epochs. The dataset was split 80/20 for training and testing sets, respectively. The overall validation outcomes for the contrast-enhanced model were accuracy 88.88%, specificity 93.87%. In contrast, the outcomes of the skeletonized model were accuracy 63.63%, specificity 65.60%. The “attention maps” that were generated of the contrast-enhanced model highlighted the retinal vasculature, perivascular region and the fovea most prominently. We trained a customized CNN to accurately determine smoking status. The retinal vasculature, the perivascular region and the fovea appear to be important predictive features in the determination of smoking status. Despite a high degree of accuracy, the sensitivity of our CNN was low. Further research is required to establish whether the frequency, duration, and dosage (quantity) of smoking would improve the sensitivity of the CNN. Nature Publishing Group UK 2019-05-09 /pmc/articles/PMC6509122/ /pubmed/31073220 http://dx.doi.org/10.1038/s41598-019-43670-0 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Vaghefi, Ehsan
Yang, Song
Hill, Sophie
Humphrey, Gayl
Walker, Natalie
Squirrell, David
Detection of smoking status from retinal images; a Convolutional Neural Network study
title Detection of smoking status from retinal images; a Convolutional Neural Network study
title_full Detection of smoking status from retinal images; a Convolutional Neural Network study
title_fullStr Detection of smoking status from retinal images; a Convolutional Neural Network study
title_full_unstemmed Detection of smoking status from retinal images; a Convolutional Neural Network study
title_short Detection of smoking status from retinal images; a Convolutional Neural Network study
title_sort detection of smoking status from retinal images; a convolutional neural network study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6509122/
https://www.ncbi.nlm.nih.gov/pubmed/31073220
http://dx.doi.org/10.1038/s41598-019-43670-0
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