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A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia
BACKGROUND: Clinical trials in Alzheimer's disease need to enroll patients whose cognition will decline over time, if left untreated, in order to demonstrate the efficacy of an intervention. Machine learning models used to screen for patients at risk of progression to dementia should therefore...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6511068/ https://www.ncbi.nlm.nih.gov/pubmed/31077314 http://dx.doi.org/10.1093/gigascience/giz055 |
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author | Tam, Angela Dansereau, Christian Iturria-Medina, Yasser Urchs, Sebastian Orban, Pierre Sharmarke, Hanad Breitner, John Bellec, Pierre |
author_facet | Tam, Angela Dansereau, Christian Iturria-Medina, Yasser Urchs, Sebastian Orban, Pierre Sharmarke, Hanad Breitner, John Bellec, Pierre |
author_sort | Tam, Angela |
collection | PubMed |
description | BACKGROUND: Clinical trials in Alzheimer's disease need to enroll patients whose cognition will decline over time, if left untreated, in order to demonstrate the efficacy of an intervention. Machine learning models used to screen for patients at risk of progression to dementia should therefore favor specificity (detecting only progressors) over sensitivity (detecting all progressors), especially when the prevalence of progressors is low. Here, we explore whether such high-risk patients can be identified using cognitive assessments and structural neuroimaging by training machine learning tools in a high-specificity regime. RESULTS: A multimodal signature of Alzheimer's dementia was first extracted from the ADNI1 dataset. We then validated the predictive value of this signature on ADNI1 patients with mild cognitive impairment (N = 235). The signature was optimized to predict progression to dementia over 3 years with low sensitivity (55.1%) but high specificity (95.6%), resulting in only moderate accuracy (69.3%) but high positive predictive value (80.4%, adjusted for a “typical” 33% prevalence rate of true progressors). These results were replicated in ADNI2 (N = 235), with 87.8% adjusted positive predictive value (96.7% specificity, 47.3% sensitivity, 85.1% accuracy). CONCLUSIONS: We found that cognitive measures alone could identify high-risk individuals, with structural measurements providing a slight improvement. The signature had comparable receiver operating characteristics to standard machine learning tools, yet a marked improvement in positive predictive value was achieved over the literature by selecting a high-specificity operating point. The multimodal signature can be readily applied for the enrichment of clinical trials. |
format | Online Article Text |
id | pubmed-6511068 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-65110682019-05-15 A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia Tam, Angela Dansereau, Christian Iturria-Medina, Yasser Urchs, Sebastian Orban, Pierre Sharmarke, Hanad Breitner, John Bellec, Pierre Gigascience Research BACKGROUND: Clinical trials in Alzheimer's disease need to enroll patients whose cognition will decline over time, if left untreated, in order to demonstrate the efficacy of an intervention. Machine learning models used to screen for patients at risk of progression to dementia should therefore favor specificity (detecting only progressors) over sensitivity (detecting all progressors), especially when the prevalence of progressors is low. Here, we explore whether such high-risk patients can be identified using cognitive assessments and structural neuroimaging by training machine learning tools in a high-specificity regime. RESULTS: A multimodal signature of Alzheimer's dementia was first extracted from the ADNI1 dataset. We then validated the predictive value of this signature on ADNI1 patients with mild cognitive impairment (N = 235). The signature was optimized to predict progression to dementia over 3 years with low sensitivity (55.1%) but high specificity (95.6%), resulting in only moderate accuracy (69.3%) but high positive predictive value (80.4%, adjusted for a “typical” 33% prevalence rate of true progressors). These results were replicated in ADNI2 (N = 235), with 87.8% adjusted positive predictive value (96.7% specificity, 47.3% sensitivity, 85.1% accuracy). CONCLUSIONS: We found that cognitive measures alone could identify high-risk individuals, with structural measurements providing a slight improvement. The signature had comparable receiver operating characteristics to standard machine learning tools, yet a marked improvement in positive predictive value was achieved over the literature by selecting a high-specificity operating point. The multimodal signature can be readily applied for the enrichment of clinical trials. Oxford University Press 2019-05-11 /pmc/articles/PMC6511068/ /pubmed/31077314 http://dx.doi.org/10.1093/gigascience/giz055 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Tam, Angela Dansereau, Christian Iturria-Medina, Yasser Urchs, Sebastian Orban, Pierre Sharmarke, Hanad Breitner, John Bellec, Pierre A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia |
title | A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia |
title_full | A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia |
title_fullStr | A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia |
title_full_unstemmed | A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia |
title_short | A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia |
title_sort | highly predictive signature of cognition and brain atrophy for progression to alzheimer's dementia |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6511068/ https://www.ncbi.nlm.nih.gov/pubmed/31077314 http://dx.doi.org/10.1093/gigascience/giz055 |
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