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A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia

BACKGROUND: Clinical trials in Alzheimer's disease need to enroll patients whose cognition will decline over time, if left untreated, in order to demonstrate the efficacy of an intervention. Machine learning models used to screen for patients at risk of progression to dementia should therefore...

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Autores principales: Tam, Angela, Dansereau, Christian, Iturria-Medina, Yasser, Urchs, Sebastian, Orban, Pierre, Sharmarke, Hanad, Breitner, John, Bellec, Pierre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6511068/
https://www.ncbi.nlm.nih.gov/pubmed/31077314
http://dx.doi.org/10.1093/gigascience/giz055
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author Tam, Angela
Dansereau, Christian
Iturria-Medina, Yasser
Urchs, Sebastian
Orban, Pierre
Sharmarke, Hanad
Breitner, John
Bellec, Pierre
author_facet Tam, Angela
Dansereau, Christian
Iturria-Medina, Yasser
Urchs, Sebastian
Orban, Pierre
Sharmarke, Hanad
Breitner, John
Bellec, Pierre
author_sort Tam, Angela
collection PubMed
description BACKGROUND: Clinical trials in Alzheimer's disease need to enroll patients whose cognition will decline over time, if left untreated, in order to demonstrate the efficacy of an intervention. Machine learning models used to screen for patients at risk of progression to dementia should therefore favor specificity (detecting only progressors) over sensitivity (detecting all progressors), especially when the prevalence of progressors is low. Here, we explore whether such high-risk patients can be identified using cognitive assessments and structural neuroimaging by training machine learning tools in a high-specificity regime. RESULTS: A multimodal signature of Alzheimer's dementia was first extracted from the ADNI1 dataset. We then validated the predictive value of this signature on ADNI1 patients with mild cognitive impairment (N = 235). The signature was optimized to predict progression to dementia over 3 years with low sensitivity (55.1%) but high specificity (95.6%), resulting in only moderate accuracy (69.3%) but high positive predictive value (80.4%, adjusted for a “typical” 33% prevalence rate of true progressors). These results were replicated in ADNI2 (N = 235), with 87.8% adjusted positive predictive value (96.7% specificity, 47.3% sensitivity, 85.1% accuracy). CONCLUSIONS: We found that cognitive measures alone could identify high-risk individuals, with structural measurements providing a slight improvement. The signature had comparable receiver operating characteristics to standard machine learning tools, yet a marked improvement in positive predictive value was achieved over the literature by selecting a high-specificity operating point. The multimodal signature can be readily applied for the enrichment of clinical trials.
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spelling pubmed-65110682019-05-15 A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia Tam, Angela Dansereau, Christian Iturria-Medina, Yasser Urchs, Sebastian Orban, Pierre Sharmarke, Hanad Breitner, John Bellec, Pierre Gigascience Research BACKGROUND: Clinical trials in Alzheimer's disease need to enroll patients whose cognition will decline over time, if left untreated, in order to demonstrate the efficacy of an intervention. Machine learning models used to screen for patients at risk of progression to dementia should therefore favor specificity (detecting only progressors) over sensitivity (detecting all progressors), especially when the prevalence of progressors is low. Here, we explore whether such high-risk patients can be identified using cognitive assessments and structural neuroimaging by training machine learning tools in a high-specificity regime. RESULTS: A multimodal signature of Alzheimer's dementia was first extracted from the ADNI1 dataset. We then validated the predictive value of this signature on ADNI1 patients with mild cognitive impairment (N = 235). The signature was optimized to predict progression to dementia over 3 years with low sensitivity (55.1%) but high specificity (95.6%), resulting in only moderate accuracy (69.3%) but high positive predictive value (80.4%, adjusted for a “typical” 33% prevalence rate of true progressors). These results were replicated in ADNI2 (N = 235), with 87.8% adjusted positive predictive value (96.7% specificity, 47.3% sensitivity, 85.1% accuracy). CONCLUSIONS: We found that cognitive measures alone could identify high-risk individuals, with structural measurements providing a slight improvement. The signature had comparable receiver operating characteristics to standard machine learning tools, yet a marked improvement in positive predictive value was achieved over the literature by selecting a high-specificity operating point. The multimodal signature can be readily applied for the enrichment of clinical trials. Oxford University Press 2019-05-11 /pmc/articles/PMC6511068/ /pubmed/31077314 http://dx.doi.org/10.1093/gigascience/giz055 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Tam, Angela
Dansereau, Christian
Iturria-Medina, Yasser
Urchs, Sebastian
Orban, Pierre
Sharmarke, Hanad
Breitner, John
Bellec, Pierre
A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia
title A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia
title_full A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia
title_fullStr A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia
title_full_unstemmed A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia
title_short A highly predictive signature of cognition and brain atrophy for progression to Alzheimer's dementia
title_sort highly predictive signature of cognition and brain atrophy for progression to alzheimer's dementia
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6511068/
https://www.ncbi.nlm.nih.gov/pubmed/31077314
http://dx.doi.org/10.1093/gigascience/giz055
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